View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17450_high_4 (Length: 357)
Name: NF17450_high_4
Description: NF17450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17450_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 100 - 309
Target Start/End: Complemental strand, 39026697 - 39026488
Alignment:
| Q |
100 |
cattaattgcttaaatctgcaataaaaagacgaacacaattacaacaggttaaaatcaatcaatagcattataaaataaatgtggctccttataattata |
199 |
Q |
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| T |
39026697 |
cattaattgcttaaatctgcaataaaaagacgaacacaattacaacaggttaaaatcaatcaatagcattatgaaataaatgtggctccttataattata |
39026598 |
T |
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| Q |
200 |
atcactaacttgtcaccaggtcgtggcccttctgatgtcaattttgaatcttttctagcttcttcaatttttgtggaatttagattcgatactgactttt |
299 |
Q |
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| T |
39026597 |
atcactaacttgtcaccaggtcgtggcccttctgatgtcaattttgaatcttttctagcttcttcaatttttgtggaatttagattcgatactgactttt |
39026498 |
T |
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| Q |
300 |
gaacctgcat |
309 |
Q |
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|||||||||| |
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| T |
39026497 |
gaacctgcat |
39026488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 304 - 357
Target Start/End: Original strand, 39029943 - 39029996
Alignment:
| Q |
304 |
ctgcatatcatttttctaggtgacaaatctatgattaagaagagatacatgcat |
357 |
Q |
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| T |
39029943 |
ctgcatatcatttttctaggtgacaaatctatgattaagaagagatacatgcat |
39029996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 39031409 - 39031331
Alignment:
| Q |
100 |
cattaattgcttaaatctgcaataaaaagacgaacacaattacaacaggttaaaatcaatcaatagcattataaaataa |
178 |
Q |
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| T |
39031409 |
cattgattgcttaaatctgaaacaaaaagaggaaggcagttacaacaggttaaagtaaatcaatagcattatgaaataa |
39031331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 37863623 - 37863587
Alignment:
| Q |
321 |
aggtgacaaatctatgattaagaagagatacatgcat |
357 |
Q |
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|||||| |||||||||||||||||||||||||||||| |
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| T |
37863623 |
aggtgataaatctatgattaagaagagatacatgcat |
37863587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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