View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17450_high_9 (Length: 309)

Name: NF17450_high_9
Description: NF17450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17450_high_9
NF17450_high_9
[»] chr6 (13 HSPs)
chr6 (1-294)||(2658774-2659067)
chr6 (16-294)||(2934616-2934888)
chr6 (42-279)||(2937503-2937734)
chr6 (2-272)||(2964512-2964776)
chr6 (17-272)||(2982881-2983130)
chr6 (16-272)||(2951956-2952200)
chr6 (16-271)||(3003596-3003839)
chr6 (16-294)||(2974024-2974296)
chr6 (16-272)||(2927174-2927427)
chr6 (10-237)||(2997213-2997455)
chr6 (146-278)||(2929456-2929582)
chr6 (160-294)||(2978408-2978535)
chr6 (204-238)||(2954546-2954580)
[»] scaffold0024 (2 HSPs)
scaffold0024 (56-237)||(35082-35263)
scaffold0024 (160-208)||(45120-45168)
[»] chr7 (2 HSPs)
chr7 (161-294)||(3339187-3339314)
chr7 (72-109)||(3339092-3339129)
[»] chr3 (2 HSPs)
chr3 (17-272)||(49618436-49618691)
chr3 (16-294)||(49613459-49613725)


Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 2659067 - 2658774
Alignment:
Q  1 atatttttattcttccaataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2659067 atatttttattcttccaataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaactt 2658968  T
Q  101 cctattgaaattcgcccgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtga 200  Q
    |||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2658967 cctattgaaattcgaccgagtaataacgcgaccgacgaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtga 2658868  T
Q  201 gcactaaaagtaagtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaacggttgacgataggactgaaat 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2658867 gcactaaaagtaagtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaacggttgacgataggactgaaat 2658774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 2934616 - 2934888
Alignment:
Q  16 caataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgc 115  Q
    |||||||||||| |||  ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  2934616 caataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcgg 2934715  T
Q  116 ccgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagt 215  Q
    ||||||||  ||  |  ||| |||| || ||||  ||||||  |||||||||| |||||||||||||||||||||||||||||||  |||||||||||||    
T  2934716 ccgagtagagacatgttcgacgaacagaagataagtctacccggtgcaactgaattgttagaagctggagttaggtttaaagtgaatactaaaagtaagt 2934815  T
Q  216 gtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaacggttgacgataggactgaaat 294  Q
    ||||||||||||||||||||      || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2934816 gtttacttgacttgaggttt------tcgggaggagttcttgaaattcctcaattaacggttgacgataggactgaaat 2934888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 42 - 279
Target Start/End: Original strand, 2937503 - 2937734
Alignment:
Q  42 atggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgcccgagtagtaacgcgaccgaagaacg 141  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||  | |||| ||| ||||     
T  2937503 atggtgatattagtataagtcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcggccgagtagagaagcgatcgacgaaca 2937602  T
Q  142 gatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggttttcaaaa 241  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||| |||          
T  2937603 gataatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaattgtttacttgacttgagattt------ 2937696  T
Q  242 tcaggaggagttcttgaaattcctcaattaacggttga 279  Q
    |||||||||||||||||||||||||||||||| |||||    
T  2937697 tcaggaggagttcttgaaattcctcaattaacagttga 2937734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 2 - 272
Target Start/End: Original strand, 2964512 - 2964776
Alignment:
Q  2 tatttttattcttccaataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttc 101  Q
    |||||| ||| || |||||||||||| |||  ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  2964512 tattttgattattacaataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatc 2964611  T
Q  102 ctattgaaattcgcccgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgag 201  Q
    ||||||||| ||| ||||||||  ||   | | |  ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  2964612 ctattgaaaatcggccgagtagagacaacatcaacaaacagataatacatctacctagtgcaactgagttgttagaagctggagttaggtttaaagtgaa 2964711  T
Q  202 cactaaaagtaagtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaa 272  Q
    |||| |||||||||||||||||||||||||||||      || ||||||||||||||||||||||||||||    
T  2964712 cactgaaagtaagtgtttacttgacttgaggttt------tcgggaggagttcttgaaattcctcaattaa 2964776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 2982881 - 2983130
Alignment:
Q  17 aataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgcc 116  Q
    ||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |    
T  2982881 aataaatcaaaattgtcttttgataatggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcggc 2982980  T
Q  117 cgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtg 216  Q
    |||||||   |  || |||| ||||||| |||||| ||| || ||||||| ||||| |||||||||||||||||||| ||||||  ||||||||||||||    
T  2982981 cgagtagagtcaagatcgaaaaacggataatacatatacagactgcaactcagttggtagaagctggagttaggtttcaagtgaaaactaaaagtaagtg 2983080  T
Q  217 tttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaa 272  Q
    ||||  |||||||||||||      || ||||||||||||||||||||||||||||    
T  2983081 tttatatgacttgaggttt------tcgggaggagttcttgaaattcctcaattaa 2983130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 2951956 - 2952200
Alignment:
Q  16 caataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgc 115  Q
    |||||||||||| |||  ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  2951956 caataaatcaaaattggattttgataagggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcgg 2952055  T
Q  116 ccgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagt 215  Q
    ||||||||    |       |||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  2952056 ccgagtagagttgt------agaatggataaaacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagtaagt 2952149  T
Q  216 gtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaa 272  Q
    ||||||||||||||||||||      || | ||||||||||||||||||||||||||    
T  2952150 gtttacttgacttgaggttt------tcggaaggagttcttgaaattcctcaattaa 2952200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 3003839 - 3003596
Alignment:
Q  16 caataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgc 115  Q
    |||||||||||| |||  ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  3003839 caataaatcaaaattggattttgataagggtgatattagtataagtcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcgg 3003740  T
Q  116 ccgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagt 215  Q
    ||||||||      | | || ||| |||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  3003739 ccgagtaga-----gtcaga-gaatggatgaaacatccaccgagtgcaactgagttgttagaagctggagttagatttaaagtgaacactgaaagtaagt 3003646  T
Q  216 gtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaatta 271  Q
    ||||||||||||||||||||      || |||||||||||||||||||||||||||    
T  3003645 gtttacttgacttgaggttt------tcgggaggagttcttgaaattcctcaatta 3003596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 2974024 - 2974296
Alignment:
Q  16 caataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgc 115  Q
    ||||||| |||| |||  |||||||||   ||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||| | |     
T  2974024 caataaaccaaaattgggttttgataacaatgatattagtataatgcacttcaatgatctgattaggatatttcatttgaaacatcctattgaaagtagg 2974123  T
Q  116 ccgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagt 215  Q
    ||||||||  |   || ||| ||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |    
T  2974124 ccgagtagagagcagatcgatgaacaaataatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactaaaagtgaat 2974223  T
Q  216 gtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaacggttgacgataggactgaaat 294  Q
    |||||| |||||||||||||      || ||||||||||||||||||||||||||||| ||| | ||| |||| |||||    
T  2974224 gtttacatgacttgaggttt------tcgggaggagttcttgaaattcctcaattaacagttcaagatgggaccgaaat 2974296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 2927174 - 2927427
Alignment:
Q  16 caataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgc 115  Q
    |||||||||||| |||  ||||||||| |||||||||| ||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||| |||     
T  2927174 caataaatcaaaattgaattttgataagggtgatattattataaggcacttcactgatctgattcggatatttcatttgcaacatcctattgaaagtcgg 2927273  T
Q  116 ccgagtagtaacgcgaccgaagaacggatgata---catctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagta 212  Q
    ||||||||  ||  |  |     | ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  2927274 ccgagtagagaccgggtctgcctagggatgataaaacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactgaaagta 2927373  T
Q  213 agtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaa 272  Q
    |||||||||||||||||||||||      || ||||||||||||||||||||||||||||    
T  2927374 agtgtttacttgacttgaggttt------tcgggaggagttcttgaaattcctcaattaa 2927427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 2997455 - 2997213
Alignment:
Q  10 ttcttccaataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaa 109  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||  |||||    
T  2997455 ttctttcaataaatcaaacttgttttttgatgatggtgatattagtataaggcacttcactgatctgattaggatatttcatttgcaacatccctttgaa 2997356  T
Q  110 attcgcccgagtag---------------taacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggttta 194  Q
    | ||| ||| ||||               || |   | ||  ||| ||||| |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  2997355 aatcggccgggtagaattgatatcaaggatatcaacatcggtgaatggatgttacatctaccaagtgcaactgagttgttagaagctggagttaagttta 2997256  T
Q  195 aagtgagcactaaaagtaagtgtttacttgacttgaggttttc 237  Q
    |||||| ||||||||| ||||||||||||||||||||||||||    
T  2997255 aagtgaacactaaaagcaagtgtttacttgacttgaggttttc 2997213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 146 - 278
Target Start/End: Original strand, 2929456 - 2929582
Alignment:
Q  146 atacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggttttcaaaatcag 245  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||      ||||    
T  2929456 atacaactacggagtgcaactgagttgttagaagctggagttaggtttaaagtgaacactaaaagtaagtgtttacttgacttaaggttt------tcag 2929549  T
Q  246 gaggagttcttgaaattcctcaattaacggttg 278  Q
    |||||||||||||||||||||||||||| ||||    
T  2929550 gaggagttcttgaaattcctcaattaacagttg 2929582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 294
Target Start/End: Original strand, 2978408 - 2978535
Alignment:
Q  160 tgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaa 259  Q
    ||||||||| ||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||      || |||||||||||||||    
T  2978408 tgcaactgaattgttagaagctgga-ttaggtttaaagtgaacactaaaagtgagtgtttacttgatttgaggttt------tcgggaggagttcttgaa 2978500  T
Q  260 attcctcaattaacggttgacgataggactgaaat 294  Q
    |||||||||||||  ||||| ||| |||| |||||    
T  2978501 attcctcaattaagagttgaggatgggaccgaaat 2978535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 2954546 - 2954580
Alignment:
Q  204 ctaaaagtaagtgtttacttgacttgaggttttca 238  Q
    |||||||| ||||||||||||||||||||||||||    
T  2954546 ctaaaagtgagtgtttacttgacttgaggttttca 2954580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 56 - 237
Target Start/End: Complemental strand, 35263 - 35082
Alignment:
Q  56 ataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgcccgagtagtaacgcgaccgaagaacggatgatacatctac 155  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||  || |||||  ||  || ||| |||| ||| ||||||||||    
T  35263 ataaggcacttcactgatctgattaggatatttcatttgcaacatcctattgaaagtcagccaagtagagacaagatcgacgaacagataatacatctac 35164  T
Q  156 cgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggttttc 237  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||   |||||||| ||||||||||||||||| |||||||    
T  35163 cgagtgcaactcagttgttagaagctggagttaggtttcaagtgaagcctaaaagtgagtgtttacttgacttggggttttc 35082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 45168 - 45120
Alignment:
Q  160 tgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaa 208  Q
    ||||| |||||||||||||||||||||||||||| |||||| |||||||    
T  45168 tgcaaatgagttgttagaagctggagttaggtttcaagtgaccactaaa 45120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 161 - 294
Target Start/End: Original strand, 3339187 - 3339314
Alignment:
Q  161 gcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaaa 260  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||| ||||||||||      || ||||||||||||||||    
T  3339187 gcaactgagttgttagaagcaggagttaggtttaaagtgaacactaaaagtgagtgtttacttggcttgaggttt------tcgggaggagttcttgaaa 3339280  T
Q  261 ttcctcaattaacggttgacgataggactgaaat 294  Q
    ||||||||||||| ||||||||| |||| |||||    
T  3339281 ttcctcaattaacagttgacgatgggaccgaaat 3339314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 3339092 - 3339129
Alignment:
Q  72 atctgattaggatatttcatttgcaacttcctattgaa 109  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  3339092 atctgattaggatatttcatttgcaacatcctattgaa 3339129  T

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Target: chr3 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 49618436 - 49618691
Alignment:
Q  17 aataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgcc 116  Q
    ||||||||||| |||  ||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||  |  |    
T  49618436 aataaatcaaaattggattttgatgacggtgatattagtataaggcacttcactgatctgattaggatatttcatttggaacatcctattgaaaggcagc 49618535  T
Q  117 cgagtagtaac----gcgac--cgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaag 210  Q
    || |||| | |      |||  |||  ||   |||||| ||||||| ||  | ||||||||||||||||||||||||||||||||||||| ||||||||     
T  49618536 cgggtagaatcatcatggacttcgacaaatctatgatatatctacccagcaccactgagttgttagaagctggagttaggtttaaagtgaacactaaaac 49618635  T
Q  211 taagtgtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaa 272  Q
    ||  |||||||||||||||||||||      || ||| ||||||||||||||||||||||||    
T  49618636 tacatgtttacttgacttgaggttt------tccggacgagttcttgaaattcctcaattaa 49618691  T

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Target: chr3; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 16 - 294
Target Start/End: Original strand, 49613459 - 49613725
Alignment:
Q  16 caataaatcaaacttgttttttgataatggtgatattagtataatgcacttcactgatctgattaggatatttcatttgcaacttcctattgaaattcgc 115  Q
    |||| |||||||||||  |||||||||||| ||| ||||||||| |||||||||||||||||||||||| || ||  |||||| |||| |  |||  ||     
T  49613459 caatcaatcaaacttgggttttgataatggcgattttagtataaggcacttcactgatctgattaggattttccacctgcaacatcctttgcaaagacgg 49613558  T
Q  116 ccgagtagtaacgcgaccgaagaacggatgatacatctaccgagtgcaactgagttgttagaagctggagttaggtttaaagtgagcactaaaagtaagt 215  Q
    |||  ||| |  |      | ||||  |||| |||||||| ||||||||||||||||||||||||||| || ||||||||||||| |||||||||| |||    
T  49613559 ccgcttagaattg------atgaaccaatgaaacatctacagagtgcaactgagttgttagaagctggggtgaggtttaaagtgaacactaaaagtgagt 49613652  T
Q  216 gtttacttgacttgaggttttcaaaatcaggaggagttcttgaaattcctcaattaacggttgacgataggactgaaat 294  Q
    |||||||||| |||||||||      |||||| | |||||||||||||||||||| |  ||||| ||| ||||||||||    
T  49613653 gtttacttgatttgaggttt------tcaggacgggttcttgaaattcctcaattgaaagttgaggattggactgaaat 49613725  T

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