View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17450_low_1 (Length: 358)

Name: NF17450_low_1
Description: NF17450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17450_low_1
NF17450_low_1
[»] chr3 (3 HSPs)
chr3 (13-344)||(44388852-44389184)
chr3 (238-292)||(38462210-38462264)
chr3 (235-288)||(1395604-1395657)
[»] scaffold0590 (1 HSPs)
scaffold0590 (238-333)||(1161-1257)
[»] scaffold0275 (1 HSPs)
scaffold0275 (238-333)||(2718-2814)
[»] chr8 (2 HSPs)
chr8 (236-292)||(14482131-14482187)
chr8 (238-337)||(39392748-39392848)
[»] chr5 (3 HSPs)
chr5 (98-150)||(36145687-36145739)
chr5 (236-273)||(10303749-10303786)
chr5 (236-273)||(35095868-35095905)
[»] chr4 (3 HSPs)
chr4 (238-290)||(46013387-46013439)
chr4 (238-290)||(46247149-46247201)
chr4 (235-273)||(4071830-4071868)
[»] chr2 (5 HSPs)
chr2 (238-329)||(38239638-38239730)
chr2 (109-151)||(12313126-12313168)
chr2 (241-273)||(12215755-12215787)
chr2 (235-271)||(31461388-31461424)
chr2 (230-270)||(43199365-43199405)
[»] chr7 (5 HSPs)
chr7 (236-271)||(12835022-12835057)
chr7 (236-290)||(30496635-30496689)
chr7 (101-150)||(28128345-28128394)
chr7 (235-331)||(49060429-49060526)
chr7 (239-271)||(45813268-45813300)
[»] chr1 (1 HSPs)
chr1 (236-268)||(27738265-27738297)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 13 - 344
Target Start/End: Original strand, 44388852 - 44389184
Alignment:
Q  13 aaaagaggcatggaatatactttgatagtttcattttattgtgcatgtttcgattgacggtgagtatgtttagattgaattatttttatctacgatcata 112  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  44388852 aaaagaggcatggaatatactttgatagtttcattttatagtgcatgtttcgattgacagtgagtatgtttagattgaattatttttatctacg-tcata 44388950  T
Q  113 agtacttgtgagattgctttggagaatttatgaaaacagttt--gacatttccatgagctgtgttttcagctgatttccataagttcccaacgatggctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44388951 agtacttgtgagattgctttggagaatttatgaaaacagtttatgacatttccatgagctgtgttttcagctgatttccataagttcccaacgatggctt 44389050  T
Q  211 atgaaaaacaacttatatagaagttaatttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgaggcttattctata 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||    
T  44389051 atgaaaaacaacttatatagaagttaatttgactttattttatcttttggtgtagaaatagtttacagataaacatttatatcatgaggcttattctata 44389150  T
Q  311 attacttaattaagatgtttatcgaaataagacc 344  Q
    ||||||||||||||||||||||||||||||||||    
T  44389151 attacttaattaagatgtttatcgaaataagacc 44389184  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Complemental strand, 38462264 - 38462210
Alignment:
Q  238 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatat 292  Q
    |||||||||||||||||||||||| ||||||||| | | | ||| ||||||||||    
T  38462264 tttgactttattttatcttttggtatagaaatagcttataaataaacacttatat 38462210  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 1395657 - 1395604
Alignment:
Q  235 taatttgactttattttatcttttggtgtagaaatagttcacacatatacactt 288  Q
    ||||||||||||||||||||||||| | ||||||||| | | |||||| |||||    
T  1395657 taatttgactttattttatcttttgttatagaaatagcttatacatatgcactt 1395604  T

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Target: scaffold0590 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 333
Target Start/End: Original strand, 1161 - 1257
Alignment:
Q  238 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcat-gaggcttattctataattacttaattaagatgtttatc 333  Q
    |||||||||||||||||||||| | ||||||||| | | |||||  ||||||||| || || | |||| |||||| |||||||||||| ||||||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatc 1257  T

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Target: scaffold0275 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 2814 - 2718
Alignment:
Q  238 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcat-gaggcttattctataattacttaattaagatgtttatc 333  Q
    |||||||||||||||||||||| | ||||||||| | | |||||  ||||||||| || || | |||| |||||| |||||||||||| ||||||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatc 2718  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Complemental strand, 14482187 - 14482131
Alignment:
Q  236 aatttgactttattttatcttttggtgtagaaatagttcacacatatacacttatat 292  Q
    |||||||||||||||||||||||| | ||||||||||| | |||||  |||||||||    
T  14482187 aatttgactttattttatcttttgttatagaaatagtttatacataagcacttatat 14482131  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 337
Target Start/End: Original strand, 39392748 - 39392848
Alignment:
Q  238 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgag-gcttattctataattacttaattaagatgtttatcgaa 336  Q
    |||||||||||||||||||||| | ||||||||||| | |||||  ||||||||| || ||  ||||| |||||| | |||||||||| | ||||| |||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttatacatagccacttatatgataagcacttatgctataaatgcttaattaagttatttatggaa 39392847  T
Q  337 a 337  Q
    |    
T  39392848 a 39392848  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Complemental strand, 36145739 - 36145687
Alignment:
Q  98 ttatctacgatcataagtacttgtgagattgctttggagaatttatgaaaaca 150  Q
    ||||||||||  |||||||| |||||||||| || ||||||||||||||||||    
T  36145739 ttatctacgactataagtacctgtgagattgattgggagaatttatgaaaaca 36145687  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Complemental strand, 10303786 - 10303749
Alignment:
Q  236 aatttgactttattttatcttttggtgtagaaatagtt 273  Q
    |||||||||||||||||||||||| | |||||||||||    
T  10303786 aatttgactttattttatcttttgttatagaaatagtt 10303749  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 35095868 - 35095905
Alignment:
Q  236 aatttgactttattttatcttttggtgtagaaatagtt 273  Q
    |||||||||||||||||||||||| | |||||||||||    
T  35095868 aatttgactttattttatcttttgttatagaaatagtt 35095905  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 46013387 - 46013439
Alignment:
Q  238 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttat 290  Q
    |||||||||||||||||||||| |  |||||||||| ||||||| ||||||||    
T  46013387 tttgactttattttatcttttgttccagaaatagtttacacataaacacttat 46013439  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 46247201 - 46247149
Alignment:
Q  238 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttat 290  Q
    |||||||||||||||||||||| |  |||||||||| ||||||| ||||||||    
T  46247201 tttgactttattttatcttttgttccagaaatagtttacacataaacacttat 46247149  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 4071868 - 4071830
Alignment:
Q  235 taatttgactttattttatcttttggtgtagaaatagtt 273  Q
    ||||||||||||||||||||||||| | |||||||||||    
T  4071868 taatttgactttattttatcttttgttatagaaatagtt 4071830  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 329
Target Start/End: Original strand, 38239638 - 38239730
Alignment:
Q  238 tttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgag-gcttattctataattacttaattaagatgtt 329  Q
    |||||||| ||||||||||||| | ||||||||| | | ||||| ||||||| || ||||| |||||| ||| || | |||||||||||||||    
T  38239638 tttgacttgattttatcttttgttatagaaatagcttatacataaacacttacatgatgagtgcttatgctacaagtgcttaattaagatgtt 38239730  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 12313126 - 12313168
Alignment:
Q  109 cataagtacttgtgagattgctttggagaatttatgaaaacag 151  Q
    |||||| ||||||||||||| || |||||||||||||||||||    
T  12313126 cataagcacttgtgagattgtttgggagaatttatgaaaacag 12313168  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 273
Target Start/End: Complemental strand, 12215787 - 12215755
Alignment:
Q  241 gactttattttatcttttggtgtagaaatagtt 273  Q
    ||||||||||||||||||| |||||||||||||    
T  12215787 gactttattttatcttttgttgtagaaatagtt 12215755  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 31461424 - 31461388
Alignment:
Q  235 taatttgactttattttatcttttggtgtagaaatag 271  Q
    ||||||||||||||||||||||||| | |||||||||    
T  31461424 taatttgactttattttatcttttgttatagaaatag 31461388  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 270
Target Start/End: Complemental strand, 43199405 - 43199365
Alignment:
Q  230 gaagttaatttgactttattttatcttttggtgtagaaata 270  Q
    |||| |||||| |||||||||||||||||| ||||||||||    
T  43199405 gaagataatttaactttattttatcttttgttgtagaaata 43199365  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 12835022 - 12835057
Alignment:
Q  236 aatttgactttattttatcttttggtgtagaaatag 271  Q
    |||||||||||||||||||||||| |||||||||||    
T  12835022 aatttgactttattttatcttttgttgtagaaatag 12835057  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 290
Target Start/End: Complemental strand, 30496689 - 30496635
Alignment:
Q  236 aatttgactttattttatcttttggtgtagaaatagttcacacatatacacttat 290  Q
    |||||||||||||||||| ||||| | ||||||||||| | ||||| ||||||||    
T  30496689 aatttgactttattttatattttgttatagaaatagtttatacataaacacttat 30496635  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 150
Target Start/End: Original strand, 28128345 - 28128394
Alignment:
Q  101 tctacgatcataagtacttgtgagattgctttggagaatttatgaaaaca 150  Q
    ||||||| |||||| ||||||||||||| ||||||||| || ||||||||    
T  28128345 tctacgagcataagcacttgtgagattgttttggagaacttgtgaaaaca 28128394  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 331
Target Start/End: Complemental strand, 49060526 - 49060429
Alignment:
Q  235 taatttgactttattttatcttttggtgtagaaatagttcacacatatacacttatatcatgaggc-ttattctataattacttaattaagatgttta 331  Q
    ||||||||||||||||||| ||||| | ||||||||| | | ||||| | |||||||| || || | |||| |||||| | |||||||||| ||||||    
T  49060526 taatttgactttattttattttttgttatagaaatagcttatacataaatacttatatgataagccattatactataagtgcttaattaagctgttta 49060429  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 45813268 - 45813300
Alignment:
Q  239 ttgactttattttatcttttggtgtagaaatag 271  Q
    ||||||||||||||||||||||| |||||||||    
T  45813268 ttgactttattttatcttttggtatagaaatag 45813300  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 268
Target Start/End: Original strand, 27738265 - 27738297
Alignment:
Q  236 aatttgactttattttatcttttggtgtagaaa 268  Q
    |||||||||||||||||||||||| ||||||||    
T  27738265 aatttgactttattttatcttttgttgtagaaa 27738297  T

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