View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17451_high_3 (Length: 344)

Name: NF17451_high_3
Description: NF17451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17451_high_3
NF17451_high_3
[»] chr2 (4 HSPs)
chr2 (42-310)||(2081770-2082039)
chr2 (45-99)||(6141389-6141444)
chr2 (45-103)||(34189938-34189997)
chr2 (43-103)||(18458702-18458763)
[»] chr4 (1 HSPs)
chr4 (43-103)||(36247749-36247810)
[»] chr3 (2 HSPs)
chr3 (43-94)||(8034694-8034746)
chr3 (43-79)||(23084443-23084479)
[»] chr8 (4 HSPs)
chr8 (57-103)||(34697098-34697145)
chr8 (43-106)||(11995260-11995324)
chr8 (43-86)||(18075742-18075785)
chr8 (43-103)||(44873207-44873268)
[»] chr5 (1 HSPs)
chr5 (43-100)||(7607393-7607451)
[»] chr7 (5 HSPs)
chr7 (43-107)||(1691533-1691598)
chr7 (43-87)||(48089183-48089227)
chr7 (43-82)||(24657922-24657961)
chr7 (43-103)||(10702663-10702724)
chr7 (43-103)||(10703218-10703279)
[»] chr1 (2 HSPs)
chr1 (43-98)||(39299273-39299329)
chr1 (47-100)||(41006125-41006179)
[»] chr6 (2 HSPs)
chr6 (51-101)||(35187963-35188014)
chr6 (44-86)||(21883188-21883230)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 42 - 310
Target Start/End: Original strand, 2081770 - 2082039
Alignment:
Q  42 gtagtttgcattatcatttatttaaaattttagctccacatgtac-taaagtctagatccgcctctagtaataatgagnnnnnnngagtgtggttcatgt 140  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||| |||       |||||||||||||||    
T  2081770 gtagtttgcattatcatttatttgaaattttagctccacatgtacctaaagtttagatccgcctctagtaataacgagtttttttgagtgtggttcatgt 2081869  T
Q  141 ctcattgacactttaccgtgattttaagatgctacattgagccaaaaatgactgttggttccacgtttggttggcgtgagttttaaacgtggctttcaat 240  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2081870 ctcattaacactttaccgtgattttaagatgctacattgagccaaaaatgactgttggttccacgtttggttggcgtgagttttaaacgtggctttcaat 2081969  T
Q  241 ttctccaaaaacacaacctatacatgactgtacggtgtcatcatgttttactacttttgttccaaacaca 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2081970 ttctccaaaaacacaacctatacatgactgtacggtgtcatcatgttttactacttttgttccacacaca 2082039  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 99
Target Start/End: Complemental strand, 6141444 - 6141389
Alignment:
Q  45 gtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatc 99  Q
    ||||||||||| |||||||| |||||||||||||||||||| ||||||||| ||||    
T  6141444 gtttgcattattatttatttgaaattttagctccacatgtacctaaagtctggatc 6141389  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 34189997 - 34189938
Alignment:
Q  45 gtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcc 103  Q
    ||||| ||||| ||||||||||||||||| |||||||| || |||||||||| |||||||    
T  34189997 gtttgtattattatttatttaaaattttaactccacatatacctaaagtctaaatccgcc 34189938  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 18458763 - 18458702
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcc 103  Q
    ||||||||||||| |||||||| | ||||||||||||||| || |||||| || ||||||||    
T  18458763 tagtttgcattattatttatttgacattttagctccacatatacctaaagcctggatccgcc 18458702  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 36247810 - 36247749
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcc 103  Q
    |||||||||||||  ||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  36247810 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccgcc 36247749  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 43 - 94
Target Start/End: Complemental strand, 8034746 - 8034694
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtct 94  Q
    ||||||||||||| |||||||| |||||||||||||||||||| |||||||||    
T  8034746 tagtttgcattattatttatttgaaattttagctccacatgtacctaaagtct 8034694  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 23084443 - 23084479
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctcca 79  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  23084443 tagtttgtattattatttatttaaaattttagctcca 23084479  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 34697098 - 34697145
Alignment:
Q  57 atttatttaaaattttagctccacatgta-ctaaagtctagatccgcc 103  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  34697098 atttatttaaaattttagctccacatgtacctaaagtctggatccgcc 34697145  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 106
Target Start/End: Original strand, 11995260 - 11995324
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcctct 106  Q
    ||||||| ||||| |||||||||||||||||||||||||| || ||||||| | |||||| ||||    
T  11995260 tagtttgtattattatttatttaaaattttagctccacatatacctaaagtttggatccgtctct 11995324  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 18075785 - 18075742
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgtac 86  Q
    ||||||||||||| |||||||| ||||||||| |||||||||||    
T  18075785 tagtttgcattattatttatttgaaattttagttccacatgtac 18075742  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 44873268 - 44873207
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcc 103  Q
    |||||||||||||  ||| ||||||||||||||||| |||||| |||||||||  |||||||    
T  44873268 tagtttgcattattgtttctttaaaattttagctccgcatgtacctaaagtctgaatccgcc 44873207  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 7607393 - 7607451
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatcc 100  Q
    ||||||| ||||| |||||||| |||||||||||||||||||| ||||||||| |||||    
T  7607393 tagtttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatcc 7607451  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 1691598 - 1691533
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcctcta 107  Q
    |||||| |||||| |||||||| ||||||||||||||||| || ||||||||| |||||| |||||    
T  1691598 tagttttcattattatttatttgaaattttagctccacatatacctaaagtctcgatccgtctcta 1691533  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 48089227 - 48089183
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgtact 87  Q
    ||||||||||||| |||||||| |||||||| |||||||||||||    
T  48089227 tagtttgcattattatttatttgaaattttaactccacatgtact 48089183  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 24657961 - 24657922
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacat 82  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  24657961 tagtttgcattattatttatttaaaattttaactccacat 24657922  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Complemental strand, 10702724 - 10702663
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcc 103  Q
    ||||||||||||| |||||||| | ||||||||||||||| || ||||||||  ||||||||    
T  10702724 tagtttgcattattatttatttgacattttagctccacatatacctaaagtcaggatccgcc 10702663  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 10703218 - 10703279
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagatccgcc 103  Q
    ||||||||||||| |||||||| | |||||| |||||||| || ||||||||| ||||||||    
T  10703218 tagtttgcattattatttatttgacattttaactccacatatacctaaagtctggatccgcc 10703279  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 39299273 - 39299329
Alignment:
Q  43 tagtttgcattatcatttatttaaaattttagctccacatgta-ctaaagtctagat 98  Q
    |||||||||||||  ||| |||||||||||| ||||||||||| |||||||||||||    
T  39299273 tagtttgcattattgtttttttaaaattttaactccacatgtacctaaagtctagat 39299329  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 41006179 - 41006125
Alignment:
Q  47 ttgcattatcatttatttaaaattttagctccacatgtac-taaagtctagatcc 100  Q
    |||||||||| ||| ||| ||||||||||||||||||||| |||||||| |||||    
T  41006179 ttgcattatcgtttttttgaaattttagctccacatgtacgtaaagtctggatcc 41006125  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 35188014 - 35187963
Alignment:
Q  51 attatcatttatttaaaattttagctccacatgta-ctaaagtctagatccg 101  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||| ||||||    
T  35188014 attattatttatttaaaattttagctccacatgaacctaaagtctggatccg 35187963  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 21883230 - 21883188
Alignment:
Q  44 agtttgcattatcatttatttaaaattttagctccacatgtac 86  Q
    |||||| ||||| |||||||||||||||||| |||||||||||    
T  21883230 agtttgtattattatttatttaaaattttagttccacatgtac 21883188  T

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