View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17451_low_4 (Length: 219)

Name: NF17451_low_4
Description: NF17451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17451_low_4
NF17451_low_4
[»] chr1 (6 HSPs)
chr1 (30-201)||(18279793-18279964)
chr1 (30-109)||(8296705-8296784)
chr1 (31-109)||(8300283-8300361)
chr1 (122-160)||(8296829-8296867)
chr1 (122-160)||(8300406-8300444)
chr1 (1-31)||(18280212-18280242)
[»] chr5 (1 HSPs)
chr5 (133-173)||(21120951-21120991)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 201
Target Start/End: Complemental strand, 18279964 - 18279793
Alignment:
Q  30 acatcaaaagaaattttcagaatttaacagacatagttttacatacttcaaaccttgaagttgaggcacaggaaaccagaaacagtgctgttataaaatc 129  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  18279964 acatcaagagaaattttcagaatttaacagacatagttttgcatacttcaaactttgaagttgaggcacaggaaaccagaaacagtgctgttataaaacc 18279865  T
Q  130 aaccctacttcatgtttataagatgaaccgatttaggattctttgttcatcaattctgcctcctctttctgc 201  Q
    |||||||||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||||||    
T  18279864 aaccctacttcatgtttataagatgaaatgatttaggattctttgcgcatcaattctgcctcctctttctgc 18279793  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 109
Target Start/End: Original strand, 8296705 - 8296784
Alignment:
Q  30 acatcaaaagaaattttcagaatttaacagacatagttttacatacttcaaaccttgaagttgaggcacaggaaaccaga 109  Q
    ||||||| | ||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||  |||||||||||||    
T  8296705 acatcaagaaaaattttcagaatataacagacatagttttacatacttcaaacattgaagatgagtgacaggaaaccaga 8296784  T

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Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 31 - 109
Target Start/End: Original strand, 8300283 - 8300361
Alignment:
Q  31 catcaaaagaaattttcagaatttaacagacatagttttacatacttcaaaccttgaagttgaggcacaggaaaccaga 109  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||||||| |||||  ||||  |||||||||||||    
T  8300283 catcaagagaaatttttagaatataacagacatagttttacatacttcaaacattgaaaatgagtgacaggaaaccaga 8300361  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 8296829 - 8296867
Alignment:
Q  122 ataaaatcaaccctacttcatgtttataagatgaaccga 160  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  8296829 ataaaaaccaccctacttcatgtttataagatgaaccga 8296867  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 8300406 - 8300444
Alignment:
Q  122 ataaaatcaaccctacttcatgtttataagatgaaccga 160  Q
    |||||| | ||||||||||||||||||||||||||||||    
T  8300406 ataaaaaccaccctacttcatgtttataagatgaaccga 8300444  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18280242 - 18280212
Alignment:
Q  1 agtttcaagcaaatttaaagacaatgttcac 31  Q
    |||||||||||||||||||||||||||||||    
T  18280242 agtttcaagcaaatttaaagacaatgttcac 18280212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 21120991 - 21120951
Alignment:
Q  133 cctacttcatgtttataagatgaaccgatttaggattcttt 173  Q
    ||||||||||||||||||||||| || ||||| ||||||||    
T  21120991 cctacttcatgtttataagatgacccaatttatgattcttt 21120951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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