View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17452_high_14 (Length: 561)
Name: NF17452_high_14
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 2e-96; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 8361867 - 8361502
Alignment:
| Q |
1 |
tgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaat |
100 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| | |||||| |||||| ||||| ||| ||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
8361867 |
tgttttgaaaatgtaatttgatgtgcaacacttgtttggttgatatgcattgcagata---tgggtggaaattgctcaccaggtgtttttttgaaacaat |
8361771 |
T |
|
| Q |
101 |
gtcttagagagagaga----tgtgaattgaataatcannnnnnn-cctgtttgaatttttggcataatatatcagctctgaacctattttgatttaattg |
195 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
8361770 |
gtcttagagagagagagaaatgtgaattgaataatcattttttttcctgtttgaatttttggcataatatatctgctctgaacctattttgattcaattt |
8361671 |
T |
|
| Q |
196 |
tcatgaaggctgaaacaatcactgtttttattgtcattttatagctagggataaggcttagtctaggagtatatatatagtgctgatcgcaactttgtgc |
295 |
Q |
| |
|
|||| | |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
8361670 |
tcattatggctaaaacaatcactgattttattgtcatttcatagctagggataaggcttagtctaggagtatatatataatgctgatcgcaaccttgtgc |
8361571 |
T |
|
| Q |
296 |
ttgggttg--tgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtg |
369 |
Q |
| |
|
|||||||| | ||||||||| |||||||||||||| |||||||| |||||| || |||||||||||||| |
|
|
| T |
8361570 |
ttgggttgttttttttgaacc-------tcatctttccattgtcctactctcaacaagtcaattgggaatggtgtg |
8361502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 324 - 543
Target Start/End: Complemental strand, 8355159 - 8354934
Alignment:
| Q |
324 |
atctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcaccacctttcttccgaactctaccatgacaagga------g |
417 |
Q |
| |
|
||||||||||| |||||||| || |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| | |
|
|
| T |
8355159 |
atctttccattttcctactctcaagaagacaattgggaatgatgtgaaattcctcaatcgccacctttcttccgaactcttccatgacaaggaaggagag |
8355060 |
T |
|
| Q |
418 |
tttacatacacttcttgaattccgaggaattcacaattacaagggaaaagtatctatctatttcttggctacgatatagctttgctagttttggctggtt |
517 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
8355059 |
tttacatccacttctcaatttccgaggaattcacaattacaagggaaaagtatctatctatttcttggctactcaatagttttgctagttttggctggtt |
8354960 |
T |
|
| Q |
518 |
tttacttattattgcctactacacat |
543 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
8354959 |
tttacttattattgcttactacacat |
8354934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 8411605 - 8411440
Alignment:
| Q |
1 |
tgttttgaaaatgtaatttggtgttcaacactcgcttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8411605 |
tgttttgaaaatgtaatttggtgttcaacactcccttggttcatatgcgttgcaaataatatgggtggaaattgctaacaaggtgtttgtttgaaacaat |
8411506 |
T |
|
| Q |
101 |
gtcttagagaga--gagatgtgaattgaataatcannnnnnncctgtttgaatttttggcataata |
164 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8411505 |
gtcttagagagagagagatgtgaattgaataatcatgtttttcctgtttgaatttttggcataata |
8411440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 81 - 218
Target Start/End: Complemental strand, 8415197 - 8415057
Alignment:
| Q |
81 |
aggtgtttgtttgaaacaatgtcttagagagagagatgtgaattgaataatcannnnnnncctgtttgaatttttggc---ataatatatcagctctgaa |
177 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||| ||||||| ||||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
8415197 |
aggtgtttgtttgaaacaatgtcttaaagagagagatatgaattgcataatcatgtttttcctgtttgaatttatggcataataatatatctgctctgaa |
8415098 |
T |
|
| Q |
178 |
cctattttgatttaattgtcatgaaggctgaaacaatcact |
218 |
Q |
| |
|
||||||| |||| ||| |||||| |||||||||||||||| |
|
|
| T |
8415097 |
cctatttagattcgattttcatgatggctgaaacaatcact |
8415057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 268 - 393
Target Start/End: Complemental strand, 8410870 - 8410745
Alignment:
| Q |
268 |
atatatagtgctgatcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtg |
367 |
Q |
| |
|
|||||| ||||| ||||||| ||| |||||| |||| |||||||||| |||| || |||||||||| |||||||| ||| ||||| |||||||||||| |
|
|
| T |
8410870 |
atatatcgtgctaatcgcaaatttctgcttgaattgttttttgaaccatttactgcacctttccattgtcctactctcaaccagacaattgggaatggtg |
8410771 |
T |
|
| Q |
368 |
tgaaattcctcaatcaccacctttct |
393 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
8410770 |
tgaaattcctcaatctccacctttct |
8410745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 426 - 528
Target Start/End: Complemental strand, 8410742 - 8410644
Alignment:
| Q |
426 |
cacttcttgaattccgaggaattcacaattacaagggaaaagtatctatctatttcttggctacgatatagctttgctagttttggctggtttttactta |
525 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |||| |||||||| ||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
8410742 |
cacttctcgagttccgaggaattcacaattacaagagaaaggtatctat----ttcttggctactctataactttgctagttttggctggtttttactta |
8410647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 150 - 232
Target Start/End: Complemental strand, 8350306 - 8350224
Alignment:
| Q |
150 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
232 |
Q |
| |
|
|||| |||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
8350306 |
atttatggcataatagatctgctctgaacctatttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8350224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 477 - 542
Target Start/End: Complemental strand, 8348966 - 8348901
Alignment:
| Q |
477 |
atttcttggctacgatatagctttgctagttttggctggtttttacttattattgcctactacaca |
542 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
8348966 |
atttcttggctagtctacagctttgctagttttggatggtttttacttattattgcctactacaca |
8348901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 150 - 232
Target Start/End: Original strand, 8480807 - 8480889
Alignment:
| Q |
150 |
atttttggcataatatatcagctctgaacctattttgatttaattgtcatgaaggctgaaacaatcactgtttttattgtcat |
232 |
Q |
| |
|
|||| |||||||||| ||| |||||||||| ||| ||||||||| |||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
8480807 |
atttatggcataataaatctactctgaacctgtttagatttaattttcatgaaggctgaattaatcactgtttttgttgtcat |
8480889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 414
Target Start/End: Complemental strand, 8349134 - 8349004
Alignment:
| Q |
284 |
gcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatca |
383 |
Q |
| |
|
|||| |||||| ||| ||||| ||| |||||| |||| ||||||||| ||| || ||||| ||||| || |||| |||| |||||||||||||||| |
|
|
| T |
8349134 |
gcaaatttgtggttgagttgtttttagaaccatttactgcatctttccgttgtccaactctcaacaaatcaattggaaatgatgtgaaattcctcaattg |
8349035 |
T |
|
| Q |
384 |
ccacctttcttccgaactctaccatgacaag |
414 |
Q |
| |
|
|||||||||| || || ||| |||| ||||| |
|
|
| T |
8349034 |
ccacctttctaccaaattcttccattacaag |
8349004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 335
Target Start/End: Complemental strand, 8415050 - 8414996
Alignment:
| Q |
281 |
atcgcaactttgtgcttgggttgtgttttgaaccaactacttcatctttccattg |
335 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||| |||||||||||||||||| |
|
|
| T |
8415050 |
atcgcaactttgtgcttgagttgtttcttgaaccatttacttcatctttccattg |
8414996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 286 - 484
Target Start/End: Original strand, 51650242 - 51650442
Alignment:
| Q |
286 |
aactttgtgcttgggttgtgttttgaaccaactacttcatctttccattgccctactctaaacaagacacttgggaatggtgtgaaattcctcaatcacc |
385 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||| ||||||||| | | |||||||| |||||| || |||| ||||||||| ||||||| |||| || |
|
|
| T |
51650242 |
aactttgtgcttgagttggactttgaaccatttactgcatctttccctcgtcctactctcaacaagtcaattggaaatggtgtgcaattccttaatcgcc |
51650341 |
T |
|
| Q |
386 |
acctttcttccgaactctaccatgacaag--gagtttacatacacttcttgaattccgaggaattcacaattacaagggaaaagtatctatctatttctt |
483 |
Q |
| |
|
|||||||| | |||||| |||||||||| |||||||||| ||||| | ||||| | || |||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
51650342 |
acctttctgctaaactcttccatgacaaggagagtttacatccacttttggaatttctcagacttcacagctacaagggaaaggtatctatctatttctt |
51650441 |
T |
|
| Q |
484 |
g |
484 |
Q |
| |
|
| |
|
|
| T |
51650442 |
g |
51650442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University