View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_high_18 (Length: 527)

Name: NF17452_high_18
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_high_18
NF17452_high_18
[»] chr4 (15 HSPs)
chr4 (5-527)||(79200-79724)
chr4 (57-212)||(37761711-37761874)
chr4 (149-212)||(24673017-24673080)
chr4 (137-202)||(40423324-40423389)
chr4 (137-188)||(43115601-43115652)
chr4 (143-205)||(9954535-9954597)
chr4 (147-199)||(5961798-5961850)
chr4 (143-202)||(25844268-25844327)
chr4 (56-87)||(27584306-27584337)
chr4 (58-96)||(3742739-3742777)
chr4 (144-202)||(11548167-11548225)
chr4 (137-179)||(40421947-40421989)
chr4 (148-201)||(2604029-2604082)
chr4 (147-212)||(24672717-24672782)
chr4 (150-198)||(37397965-37398013)
[»] chr7 (18 HSPs)
chr7 (57-212)||(101290-101453)
chr7 (137-202)||(25690726-25690791)
chr7 (57-199)||(30357871-30358021)
chr7 (137-212)||(5815113-5815188)
chr7 (144-202)||(35851974-35852032)
chr7 (137-187)||(41432936-41432986)
chr7 (147-208)||(16780767-16780828)
chr7 (55-212)||(6394535-6394700)
chr7 (137-200)||(45773208-45773271)
chr7 (148-208)||(48078598-48078658)
chr7 (143-202)||(11754696-11754755)
chr7 (137-212)||(41195701-41195776)
chr7 (137-202)||(28557249-28557314)
chr7 (159-212)||(42094330-42094383)
chr7 (144-200)||(37108939-37108995)
chr7 (137-212)||(22600653-22600728)
chr7 (68-113)||(101214-101258)
chr7 (140-201)||(31726653-31726714)
[»] chr8 (10 HSPs)
chr8 (147-212)||(38924418-38924483)
chr8 (118-202)||(8238737-8238825)
chr8 (148-205)||(29204624-29204681)
chr8 (137-212)||(10340229-10340304)
chr8 (137-202)||(9030598-9030663)
chr8 (142-202)||(32729429-32729489)
chr8 (148-212)||(34273130-34273194)
chr8 (150-205)||(33435407-33435462)
chr8 (156-201)||(30370054-30370099)
chr8 (139-187)||(38202001-38202049)
[»] chr3 (12 HSPs)
chr3 (137-202)||(27177330-27177395)
chr3 (57-202)||(6588237-6588390)
chr3 (143-202)||(25258079-25258138)
chr3 (146-199)||(40413445-40413498)
chr3 (137-202)||(12767337-12767402)
chr3 (137-202)||(52205046-52205109)
chr3 (137-199)||(25543485-25543546)
chr3 (145-182)||(28480224-28480261)
chr3 (145-182)||(28509407-28509444)
chr3 (137-201)||(581065-581128)
chr3 (150-202)||(37058992-37059044)
chr3 (162-202)||(54905139-54905179)
[»] chr1 (10 HSPs)
chr1 (145-202)||(1831258-1831315)
chr1 (143-182)||(2930282-2930321)
chr1 (137-199)||(34062657-34062719)
chr1 (141-198)||(17492734-17492791)
chr1 (158-202)||(12082181-12082225)
chr1 (55-102)||(31847316-31847363)
chr1 (143-187)||(768312-768356)
chr1 (148-199)||(5760058-5760109)
chr1 (158-202)||(17916189-17916233)
chr1 (56-96)||(32191059-32191099)
[»] chr2 (11 HSPs)
chr2 (160-212)||(15404948-15405000)
chr2 (147-202)||(4422823-4422878)
chr2 (137-203)||(12670776-12670842)
chr2 (68-105)||(40791297-40791334)
chr2 (147-211)||(15538954-15539018)
chr2 (146-202)||(21488865-21488921)
chr2 (143-198)||(14442112-14442167)
chr2 (147-202)||(28314674-28314729)
chr2 (144-199)||(37172605-37172660)
chr2 (163-211)||(11279973-11280021)
chr2 (55-99)||(37028085-37028129)
[»] chr6 (2 HSPs)
chr6 (141-205)||(32820801-32820865)
chr6 (143-202)||(22682573-22682633)
[»] chr5 (7 HSPs)
chr5 (143-199)||(35895034-35895090)
chr5 (57-119)||(26278576-26278638)
chr5 (137-198)||(31536419-31536480)
chr5 (140-196)||(18398578-18398634)
chr5 (148-202)||(26278516-26278570)
chr5 (57-94)||(24128188-24128225)
chr5 (150-202)||(14105979-14106031)


Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 5 - 527
Target Start/End: Complemental strand, 79724 - 79200
Alignment:
Q  5 atgtcgaagaatatagacaacacta--agtgaaaagacaacactaaaagtagatgaaaattgttcttctccctttcaaaattgcttattcccttgaccca 102  Q
    |||| |||||| |||||||||||||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79724 atgtagaagaaaatagacaacactataagtaaaaagacaacactaaaagtagatgaaaattgttcttctccctttcaaaattgcttattcccttgaccca 79625  T
Q  103 acggcagttaattcacgatatttttcagcggtatctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  79624 acagcagttaactcacgatatttttcagcggtatctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 79525  T
Q  203 acaacgtgagctaaaataaatgtttttaatcattgcaaatattatatatatttttcatgcttttggaacttgttgtttctcttggctcctataatattcc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  79524 acaacgtgagctaaaataaatgtttttaatcattgcaaatattatatatattttttatgcttttggaacttgttgtttctcttggctcctataatattcc 79425  T
Q  303 tttaagttggannnnnnnnnnnnnnnaataattttacattatgtgaaaagttgattttggtccctccacttagtacataaactacgatgaatattttatg 402  Q
    |||||||||||               ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  79424 tttaagttggattttttactttttttaataattttacataatgtgaaaaattgattttggtccctccacttagtacataaactaagatgaatattttatg 79325  T
Q  403 gattagtttgaagctgaacaaaattttagaagaattgtaaacatgagggtacactgtacaagtaccaccgcaaacgagtgggagccttacaccaaatacc 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||    
T  79324 gattagtttgaagctgaacaaaattttagaagaattgtaaacatgagggtacactgtacaagtaactccgcaaaagagtgggagccttacaccaaatacc 79225  T
Q  503 tgtttttccttttcctttctaattt 527  Q
    ||||||||||||||| | |||||||    
T  79224 tgtttttccttttccctcctaattt 79200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 57 - 212
Target Start/End: Original strand, 37761711 - 37761874
Alignment:
Q  57 gaaaattgttcttctccctttcaaaattgcttattcccttgacccaacggcagttaattcacg----atatttttcagcgg----tatctcacactgaca 148  Q
    ||||||||||||| ||||||||||||||||| ||||||||||  |||||| |||||| |||||    | ||||||||||||    || |||||| |||||    
T  37761711 gaaaattgttcttttccctttcaaaattgctcattcccttgatacaacggaagttaactcacgttcaacatttttcagcggtagttaactcacattgaca 37761810  T
Q  149 ctttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
     |||||||||| |||||||| | |||||||| ||||||||   ||||||||||| || ||||||    
T  37761811 ttttttagatcagttcaatcgcattttaagttgggtcaaccattcttaaaagtgtcagcgtgag 37761874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 24673080 - 24673017
Alignment:
Q  149 ctttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    ||||||||||| |||||||||||||||| |||||||||||  |||||||||||| |||||||||    
T  24673080 ctttttagatcagttcaatcactttttatgtcgggtcaaccaatcttaaaagtgccaacgtgag 24673017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 40423389 - 40423324
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||| |||||| |||| |||||||||||||||||||||||||||| |||||  ||||||||||||    
T  40423389 ctcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtg 40423324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 188
Target Start/End: Original strand, 43115601 - 43115652
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaac 188  Q
    ||||||||||||||||| ||||||||||||| | |||||||||||| |||||    
T  43115601 ctcacactgacacttttaagatcggttcaataattttttaagtcggttcaac 43115652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 205
Target Start/End: Original strand, 9954535 - 9954597
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgaca 205  Q
    |||||||||||||||||  |||||| | ||||||||| |||||||  ||||||||||||||||    
T  9954535 ctgacactttttagatcaattcaattattttttaagttgggtcaatcgatcttaaaagtgaca 9954597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 5961798 - 5961850
Alignment:
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    ||||||| ||||| ||||||||||||||||||| || ||||| ||||||||||    
T  5961798 cacttttaagatcagttcaatcactttttaagttggctcaaccgatcttaaaa 5961850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 25844327 - 25844268
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||| |||| | ||||||| ||||||||| ||| ||||| |||||||||||||    
T  25844327 ctgacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaaagtg 25844268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 27584306 - 27584337
Alignment:
Q  56 tgaaaattgttcttctccctttcaaaattgct 87  Q
    ||||||||||||||||||||||||||||||||    
T  27584306 tgaaaattgttcttctccctttcaaaattgct 27584337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 96
Target Start/End: Original strand, 3742739 - 3742777
Alignment:
Q  58 aaaattgttcttctccctttcaaaattgcttattccctt 96  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  3742739 aaaattgttcttctccctttcaaaattgctcaatccctt 3742777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 11548225 - 11548167
Alignment:
Q  144 tgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||||||||| ||||||||||| || ||||||||||||| || || ||| |||||||||    
T  11548225 tgacacttttaagatcggttcattcgctttttaagtcggttcgaccgatgttaaaagtg 11548167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 179
Target Start/End: Complemental strand, 40421989 - 40421947
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagt 179  Q
    ||||||||||||||||| ||||  |||||||||||||||||||    
T  40421989 ctcacactgacacttttaagattagttcaatcactttttaagt 40421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 2604029 - 2604082
Alignment:
Q  148 actttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagt 201  Q
    |||||| | |||| |||||||| ||||||| |||| ||||||||||||||||||    
T  2604029 acttttaaaatcgattcaatcattttttaaatcggttcaactgatcttaaaagt 2604082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 24672782 - 24672717
Alignment:
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    |||| ||||||||| ||||||||||||||||||||| | ||| |||   ||||||| |||||||||    
T  24672782 cactatttagatcgattcaatcactttttaagtcggataaaccgataaaaaaagtgtcaacgtgag 24672717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 37398013 - 37397965
Alignment:
Q  150 tttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaa 198  Q
    |||| |||||||||||||||||||||||||| | |||||  ||||||||    
T  37398013 ttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaa 37397965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 57 - 212
Target Start/End: Complemental strand, 101453 - 101290
Alignment:
Q  57 gaaaattgttcttctccctttcaaaattgcttattcccttgacccaacggcagttaattca----cgatatttttcagcggtat----ctcacactgaca 148  Q
    |||||||| |||||||||||||||||||| | ||| |||||||| ||||| |||||| |||    ||| ||||||||||||||     ||||  ||  ||    
T  101453 gaaaattgctcttctccctttcaaaattgttcatttccttgacctaacgggagttaactcatgctcgacatttttcagcggtagttaactcatgctagca 101354  T
Q  149 ctttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    ||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| || ||||||    
T  101353 ctttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgag 101290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 25690726 - 25690791
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||    
T  25690726 ctcacgctgacactttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtg 25690791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 57 - 199
Target Start/End: Complemental strand, 30358021 - 30357871
Alignment:
Q  57 gaaaattgttcttctccctttcaaaattgcttattcccttgacccaacggcagttaattcacgat----atttttcagcggtatct----cacactgaca 148  Q
    ||||||||||||||||||||| ||||||  | |||||||| | |||||||  ||||||||||| |    |||||||| ||||| ||    ||||| ||||    
T  30358021 gaaaattgttcttctcccttttaaaatttttcattcccttaatccaacgggggttaattcacgttcggcatttttcatcggtagctaattcacaccgaca 30357922  T
Q  149 ctttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    |||||||||| | |||| |||||||||| ||| ||||||||||||||||||    
T  30357921 ctttttagattgattcactcactttttatgtcaggtcaactgatcttaaaa 30357871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 5815188 - 5815113
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    ||||||||  ||||||||| || ||||||||||||||||||||| ||||||| ||||||||||||| ||| |||||    
T  5815188 ctcacactagcactttttaaattggttcaatcactttttaagtcaggtcaaccgatcttaaaagtgccaatgtgag 5815113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 35852032 - 35851974
Alignment:
Q  144 tgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  35852032 tgacacttttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtg 35851974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 41432986 - 41432936
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaa 187  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  41432986 ctcacactaacactttttagatcggttcaatcactttttaagtcggatcaa 41432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 16780828 - 16780767
Alignment:
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacg 208  Q
    ||||||| |||||||||||||||||||||||||||  ||||| ||||||||||||| |||||    
T  16780828 cacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagtgtcaacg 16780767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 6394700 - 6394535
Alignment:
Q  55 atgaaaattgttcttctccctttcaaaattgcttattcccttgacccaacggcagttaattcacgat----atttttcagcggtat----ctcacactga 146  Q
    ||||||||| ||||||||| ||| ||||||| |||||| ||||  ||||||| |||||| ||||| |    |||||| |||||||     ||||| || |    
T  6394700 atgaaaattattcttctcctttttaaaattgtttattctcttgctccaacggaagttaactcacgcttgacattttttagcggtagttaactcacgctaa 6394601  T
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    ||| | |||||||||||||||||| |||||||  ||||||| ||||||||||| || || ||||||    
T  6394600 cacgtattagatcggttcaatcaccttttaagatgggtcaattgatcttaaaaatgtcagcgtgag 6394535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 45773208 - 45773271
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaag 200  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||| |||||  ||||||||||    
T  45773208 ctcacgctgacactttttagatcggttcaatcactttttacgccggttcaaccaatcttaaaag 45773271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 48078598 - 48078658
Alignment:
Q  148 actttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacg 208  Q
    |||||| |||||  ||||||||||||||||||||| ||||| ||||||||||||| |||||    
T  48078598 acttttaagatcaattcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacg 48078658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 11754755 - 11754696
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||| ||||||||||||||||||||||  |||| |||||  ||||||||||||    
T  11754755 ctgacacttttaagatcggttcaatcactttttatctcggttcaaccaatcttaaaagtg 11754696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 41195701 - 41195776
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    ||||| ||||||||||| || | | |||||||||||||||||  || ||||||||||||||||||| |||| ||||    
T  41195701 ctcacgctgacacttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtgtcaacttgag 41195776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 28557314 - 28557249
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||| ||||||||||| |||||||||||||||  ||||||  | | |||||||||||||||||||    
T  28557314 ctcacgctgacacttttaagatcggttcaatcatattttaacccagttcaactgatcttaaaagtg 28557249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 42094383 - 42094330
Alignment:
Q  159 cggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    |||||||||||||||||||||| ||| ||| | ||||||||||| |||||||||    
T  42094383 cggttcaatcactttttaagtcaggttaaccggtcttaaaagtgtcaacgtgag 42094330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 37108995 - 37108939
Alignment:
Q  144 tgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaag 200  Q
    |||||| ||||||||||||||||| |  ||||||||||| ||||||||| |||||||    
T  37108995 tgacaccttttagatcggttcaattatattttaagtcggttcaactgattttaaaag 37108939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 22600653 - 22600728
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    |||||||||||| |||| |||||| |||||| |||||||||| ||| |||||  ||||||| |||| |||| ||||    
T  22600653 ctcacactgacatttttaagatcgattcaattactttttaagccggttcaaccaatcttaatagtgccaacatgag 22600728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 101214 - 101258
Alignment:
Q  68 ttctccctttcaaaattgcttattcccttgacccaacggcagttaa 113  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||    
T  101214 ttctccctttcaaaattgctca-tcccttgacccaacgggagttaa 101258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 31726714 - 31726653
Alignment:
Q  140 acactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagt 201  Q
    ||||| |||||||| || ||||||||||||  ||||||| ||| ||||| ||||||||||||    
T  31726714 acactaacacttttaagttcggttcaatcatattttaagccggttcaaccgatcttaaaagt 31726653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 9e-22; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 38924418 - 38924483
Alignment:
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  38924418 cacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgag 38924483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 8238737 - 8238825
Alignment:
Q  118 cgatatttttcagcggtat----ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||||||||||     ||||| ||||||||||||||||| ||||||||||||||| |||||| ||||| |||||||||||||    
T  8238737 cgatatttttcagcggtagttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaaagtg 8238825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 148 - 205
Target Start/End: Original strand, 29204624 - 29204681
Alignment:
Q  148 actttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgaca 205  Q
    |||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29204624 acttttaaaatcggttcaatcactttttaagtcggatcaactgatcttaaaagtgaca 29204681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 10340229 - 10340304
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    |||||||||||||||||||||||| |||||||| ||||||||| |||||  | ||||||||||||| || ||||||    
T  10340229 ctcacactgacactttttagatcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgag 10340304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 9030598 - 9030663
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||| ||||||||| |||||| |||||||||||||||| |||| |||| ||||||||||||||    
T  9030598 ctcacaccgacacttttaagatcgattcaatcactttttaaatcggttcaattgatcttaaaagtg 9030663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 142 - 202
Target Start/End: Original strand, 32729429 - 32729489
Alignment:
Q  142 actgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||||||||||| ||||| ||||||| | |||||||||||| ||||| |||||||||||||    
T  32729429 actgacacttttaagatcagttcaattattttttaagtcggttcaaccgatcttaaaagtg 32729489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 34273194 - 34273130
Alignment:
Q  148 actttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    |||||| ||||||||||||||||| |||||||||| ||||| ||| ||||||||| || ||||||    
T  34273194 acttttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgag 34273130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 33435462 - 33435407
Alignment:
Q  150 tttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgaca 205  Q
    |||| ||||| ||| ||| |||||||||||||| ||||| ||||||||||||||||    
T  33435462 ttttaagatcagtttaattactttttaagtcggttcaaccgatcttaaaagtgaca 33435407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 201
Target Start/End: Complemental strand, 30370099 - 30370054
Alignment:
Q  156 gatcggttcaatcactttttaagtcgggtcaactgatcttaaaagt 201  Q
    |||||||||||||||||||||||| || ||||| ||| ||||||||    
T  30370099 gatcggttcaatcactttttaagttggttcaaccgattttaaaagt 30370054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Original strand, 38202001 - 38202049
Alignment:
Q  139 cacactgacactttttagatcggttcaatcactttttaagtcgggtcaa 187  Q
    ||||| ||||||||| ||||||||||||| ||||||||| |||| ||||    
T  38202001 cacacagacacttttaagatcggttcaattactttttaaatcggttcaa 38202049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 9e-22; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 27177330 - 27177395
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||    
T  27177330 ctcacactgacactttttagatcggttcaatcattttttaagttgggtcaaccgatcttaaaagtg 27177395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 6588237 - 6588390
Alignment:
Q  57 gaaaattgttcttctccctttcaaaattgcttattcccttgacccaacggcagttaattcacgat----atttttcagcggtat----ctcacactgaca 148  Q
    |||||||  |||||||||||||||||||| | |||||||||||| | ||| |||||| ||||| |    |||||||||| |||     ||||| ||||||    
T  6588237 gaaaattcctcttctccctttcaaaattgttcattcccttgacctagcggtagttaactcacgcttggcatttttcagcagtagttaactcacgctgaca 6588336  T
Q  149 ctttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||||| ||||||||||| ||  ||||||||||||||||| |||||||||||||    
T  6588337 cttttttgatcggttcaaacatgttttaagtcgggtcaaccgatcttaaaagtg 6588390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 25258138 - 25258079
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||| |||||||||||||    
T  25258138 ctgacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagtg 25258079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 40413498 - 40413445
Alignment:
Q  146 acactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    ||||| || |||||||||||||||||||||||||||||||||| ||||||||||    
T  40413498 acactattgagatcggttcaatcactttttaagtcgggtcaaccgatcttaaaa 40413445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 12767402 - 12767337
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||| || |||||||| |||||| ||||||||||||||||||||| ||||| ||||||| |||||    
T  12767402 ctcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtg 12767337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 202
Target Start/End: Complemental strand, 52205109 - 52205046
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||| |||| ||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  52205109 ctcacgctgatactttttagatcg-ttcaatcactttt-aagtcgggtcaaccgatcttaaaagtg 52205046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 25543485 - 25543546
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    ||||||||||| ||||||||||||| |||| ||| |||||||||| |||||  ||||||||||    
T  25543485 ctcacactgaccctttttagatcggctcaaacac-ttttaagtcgagtcaatcgatcttaaaa 25543546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 28480261 - 28480224
Alignment:
Q  145 gacactttttagatcggttcaatcactttttaagtcgg 182  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  28480261 gacactttttagatcgattcaatcactttttaaatcgg 28480224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 28509444 - 28509407
Alignment:
Q  145 gacactttttagatcggttcaatcactttttaagtcgg 182  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  28509444 gacactttttagatcgattcaatcactttttaaatcgg 28509407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 581128 - 581065
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagt 201  Q
    ||||||||| ||||||| ||| | ||||||| |||||||||||| | ||||| ||||||||||||    
T  581128 ctcacactg-cacttttaagacccgttcaataactttttaagtctgttcaaccgatcttaaaagt 581065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 37059044 - 37058992
Alignment:
Q  150 tttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||| |||||| |||||||| |||||||||||  ||||| |||||||||||||    
T  37059044 ttttaagatcgattcaatcattttttaagtcgattcaaccgatcttaaaagtg 37058992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 54905139 - 54905179
Alignment:
Q  162 ttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||||||||||||| | ||| |||||||||||||    
T  54905139 ttcaatcactttttaagtcggtttaaccgatcttaaaagtg 54905179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 1831315 - 1831258
Alignment:
Q  145 gacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  1831315 gacacttttaagatcggtttaatcgctttttaagtcggttcaactgatcttaaaagtg 1831258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 143 - 182
Target Start/End: Complemental strand, 2930321 - 2930282
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgg 182  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2930321 ctgacactttttagatcggttcaatcactttttaagtcgg 2930282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 34062657 - 34062719
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||  ||||||||| ||||||    
T  34062657 ctcacgctgacacttttaaaatcggttcaatcactttttaagtcgtttcaactgattttaaaa 34062719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 17492791 - 17492734
Alignment:
Q  141 cactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaa 198  Q
    ||||||||||||| | |||| ||||||||||||||||||||  |||||||||||||||    
T  17492791 cactgacacttttaatatcgattcaatcactttttaagtcgattcaactgatcttaaa 17492734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 12082181 - 12082225
Alignment:
Q  158 tcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||||||||||||||| |||||||||||||| |||||||||||||    
T  12082181 tcggttcaatcactttgtaagtcgggtcaaccgatcttaaaagtg 12082225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 55 - 102
Target Start/End: Original strand, 31847316 - 31847363
Alignment:
Q  55 atgaaaattgttcttctccctttcaaaattgcttattcccttgaccca 102  Q
    |||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  31847316 atgaaaattgctcttctccctttcaaaattgctcattcctttgaccca 31847363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 768356 - 768312
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgggtcaa 187  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||    
T  768356 ctgacacttttaagatcagttcaatcactttttaagtcggttcaa 768312  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 5760058 - 5760109
Alignment:
Q  148 actttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    |||||| |||||| ||||||||||||||||||||  ||||| ||||||||||    
T  5760058 acttttaagatcgcttcaatcactttttaagtcgcttcaaccgatcttaaaa 5760109  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 17916233 - 17916189
Alignment:
Q  158 tcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||||| |||||||||||||||||| ||||  |||||||||||||    
T  17916233 tcggtttaatcactttttaagtcggttcaatcgatcttaaaagtg 17916189  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 32191059 - 32191099
Alignment:
Q  56 tgaaaattgttcttctccctttcaaaattgcttattccctt 96  Q
    ||||||||| | ||||||||||||||||| |||||||||||    
T  32191059 tgaaaattgcttttctccctttcaaaattacttattccctt 32191099  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 15404948 - 15405000
Alignment:
Q  160 ggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 212  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| |||||||||    
T  15404948 ggttcaatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgag 15405000  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 4422878 - 4422823
Alignment:
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||||||| |||||||||||||||||||  ||||| |||||||||||||    
T  4422878 cactttttagatcggctcaatcactttttaagtcgaatcaaccgatcttaaaagtg 4422823  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 12670776 - 12670842
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtga 203  Q
    ||||| ||||||||||| ||||||||||||||| |||||||| ||  ||||| ||||||||||||||    
T  12670776 ctcacgctgacacttttaagatcggttcaatcaatttttaagccgactcaaccgatcttaaaagtga 12670842  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 105
Target Start/End: Original strand, 40791297 - 40791334
Alignment:
Q  68 ttctccctttcaaaattgcttattcccttgacccaacg 105  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40791297 ttctccctttcaaaattgcttattcccttgacccaacg 40791334  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 15538954 - 15539018
Alignment:
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtga 211  Q
    ||||||| ||||||||||||| |||||||||||||| ||||  ||||||||||||| || |||||    
T  15538954 cacttttaagatcggttcaattactttttaagtcggttcaatcgatcttaaaagtgtcagcgtga 15539018  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 21488865 - 21488921
Alignment:
Q  146 acactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||||||| ||||||||||||||| |||||||||| | ||||| |||||||||||||    
T  21488865 acacttttaagatcggttcaatcattttttaagtcagttcaaccgatcttaaaagtg 21488921  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 14442112 - 14442167
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaa 198  Q
    ||||||||||| ||||| || ||||||||||||||| ||  |||||||||||||||    
T  14442112 ctgacacttttaagatcagtacaatcactttttaagccgattcaactgatcttaaa 14442167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 28314729 - 28314674
Alignment:
Q  147 cactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||| ||||||||||||||||||||||| | || | ||| |||||||||||||    
T  28314729 cacttttaagatcggttcaatcactttttaaattggttgaaccgatcttaaaagtg 28314674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 37172660 - 37172605
Alignment:
Q  144 tgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    |||||||||| | |||||||||||||||||||||||| | |||||  |||||||||    
T  37172660 tgacacttttaacatcggttcaatcactttttaagtcagttcaaccaatcttaaaa 37172605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 211
Target Start/End: Complemental strand, 11280021 - 11279973
Alignment:
Q  163 tcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtga 211  Q
    |||||||||||||||||||| ||||| ||| |||||| || ||||||||    
T  11280021 tcaatcactttttaagtcggttcaaccgattttaaaattgtcaacgtga 11279973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 37028085 - 37028129
Alignment:
Q  55 atgaaaattgttcttctccctttcaaaattgcttattcccttgac 99  Q
    |||||||||| |||||||||||| ||||||||| ||| |||||||    
T  37028085 atgaaaattgctcttctcccttttaaaattgctcatttccttgac 37028129  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 32820801 - 32820865
Alignment:
Q  141 cactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtgaca 205  Q
    |||||||||| || |||||||||||  |||||||||||| || ||||||||| ||||||||||||    
T  32820801 cactgacactattaagatcggttcagacactttttaagttggttcaactgatgttaaaagtgaca 32820865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 22682573 - 22682633
Alignment:
Q  143 ctgacactttttagatcg-gttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||| |||||  ||||||||| ||||||||| || ||||| |||||||||||||    
T  22682573 ctgacacttttaagatcctgttcaatcattttttaagttggttcaaccgatcttaaaagtg 22682633  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 143 - 199
Target Start/End: Original strand, 35895034 - 35895090
Alignment:
Q  143 ctgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaa 199  Q
    ||||||||||||||||| ||| ||| |||||||||||||||||||  ||||||||||    
T  35895034 ctgacactttttagatcagttaaattactttttaagtcgggtcaatcgatcttaaaa 35895090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 119
Target Start/End: Complemental strand, 26278638 - 26278576
Alignment:
Q  57 gaaaattgttcttctccctttcaaaattgcttattcccttgacccaacggcagttaattcacg 119  Q
    ||||||| || |||||||||| ||||||||| |||||||||| |||| || ||||||||||||    
T  26278638 gaaaattatttttctcccttttaaaattgctcattcccttgatccaatgggagttaattcacg 26278576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 31536480 - 31536419
Alignment:
Q  137 ctcacactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaa 198  Q
    |||||||||| | |||| ||||||||||||| | |||||||||||| | |||||||||||||    
T  31536480 ctcacactgatatttttaagatcggttcaataattttttaagtcggtttaactgatcttaaa 31536419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 18398634 - 18398578
Alignment:
Q  140 acactgacactttttagatcggttcaatcactttttaagtcgggtcaactgatctta 196  Q
    |||||||||||||| ||||||||||| |||||||||||  ||| ||||| |||||||    
T  18398634 acactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatctta 18398578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 26278570 - 26278516
Alignment:
Q  148 actttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    ||||||||||||||||| |  ||||||||||| || |||| ||||||||||||||    
T  26278570 actttttagatcggttctactactttttaagttggatcaattgatcttaaaagtg 26278516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 24128188 - 24128225
Alignment:
Q  57 gaaaattgttcttctccctttcaaaattgcttattccc 94  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  24128188 gaaaattgtttttctccctttcaaaattgctcattccc 24128225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 202
Target Start/End: Complemental strand, 14106031 - 14105979
Alignment:
Q  150 tttttagatcggttcaatcactttttaagtcgggtcaactgatcttaaaagtg 202  Q
    |||| ||||||||||||||||||||||||| || |  || |||||||||||||    
T  14106031 ttttaagatcggttcaatcactttttaagttggtttgaccgatcttaaaagtg 14105979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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