View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_2 (Length: 771)
Name: NF17452_high_2
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 494; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 218 - 756
Target Start/End: Original strand, 41074813 - 41075355
Alignment:
| Q |
218 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacgggcagttcctagttgatataccttcgagg |
317 |
Q |
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| T |
41074813 |
tttatgtcattgaaagttttctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacaggcagttcctagttgatataccttcgagg |
41074912 |
T |
|
| Q |
318 |
atcaggactctggaagttaatatggtgatggtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagt |
417 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074913 |
atcaggactctggaagttaatatggtgatagtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagt |
41075012 |
T |
|
| Q |
418 |
agtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatattcaacgagagcttgtatgcttggattatttg |
517 |
Q |
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| T |
41075013 |
agtttgaatgcaaatacttggagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatatttaacgagagcttgtatgcttggattatttg |
41075112 |
T |
|
| Q |
518 |
gtggtttttaagcatgtctgtgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggtatccggttattgagtggttg |
617 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
41075113 |
gtgatttttaagtatgtctgtgttactactttcaaggagtaacaaaggttattggtaccataaaggcaaatttgattggtatccggttattgagtggttg |
41075212 |
T |
|
| Q |
618 |
ttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttccttttggactatctt |
717 |
Q |
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| T |
41075213 |
ttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctgattccttttggactatctt |
41075312 |
T |
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| Q |
718 |
aagggtctggtctaagtggt----ggaatacttatgtgtgtat |
756 |
Q |
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||| |||||||||||||||| ||||||||||||||||||| |
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| T |
41075313 |
aagtgtctggtctaagtggtgaaaggaatacttatgtgtgtat |
41075355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 49 - 756
Target Start/End: Original strand, 41086129 - 41086836
Alignment:
| Q |
49 |
atagcttcacctgttcttctggttgatcagaatttatctgtatgaaaggtgagaaactgttttgtacctctggtgtgtcaga--tcatttatgac----- |
141 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||||| | | |||||||| | |
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| T |
41086129 |
atagcttcacctgttcttctggttgatcagaatttatctgtgtgaaaggtgtgacactgttttgta--tctggtgtgttataaatcatttatagctcttt |
41086226 |
T |
|
| Q |
142 |
-atggttttggctggaaatagcagaatgtttgttgtcactaaactgaaacaa---tgatgattgtggatctaatggtgagtttatgtcattgaaagtttt |
237 |
Q |
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||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||| |||||||||| |||||||||||||| ||| || || |
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| T |
41086227 |
gatggttttggctggaaataa-agaatgattgttgtcgctaaactgaaacaaatttgatgattgcggatctaatgctgagtttatgtcatggaatgtgtt |
41086325 |
T |
|
| Q |
238 |
ctgctctggaatactgctgtgttttgtgccatgttgctgattttgtaaacgggcagttcctagttgatataccttcgaggatcaggactctggaagttaa |
337 |
Q |
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|||||||||| |||| ||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| |||||| ||||||||| |||||| |
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| T |
41086326 |
ctgctctggagcactgttgtgtcctgtgccatgttgctgattttgtaaattggatgttcccagttgatataccttggaggattgggactctggtagttaa |
41086425 |
T |
|
| Q |
338 |
tatggtgatggtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagtagtttgaatgcaaatacttg |
437 |
Q |
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||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||| |
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| T |
41086426 |
tatggtgatagtattctctgaggtgcttgcagtagagtacatgttctgatttgccagtattgttaacacagttcagtagcagtttgaatgcaaatacttg |
41086525 |
T |
|
| Q |
438 |
gagtgattggtgtgctggtgaagagtgctcattgtagtatgaattatattcaacgagagcttgtatgcttggattatttggtggtttttaagcatgtctg |
537 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||| |||||||||||||||||||||| ||||||||| |||| |
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| T |
41086526 |
aagtgattggtgtgctggtgaagagtgctcattgtattatgtattatatttaaccagagtttgtatgcttggattatttggtagtttttaagtatgt--- |
41086622 |
T |
|
| Q |
538 |
tgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgag |
637 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
41086623 |
--ttactactttcaaggagt-acaaagg---atggtaccatgaaggcaaatttgattggtatccggttattgattggttgtttttttgagtatacatgag |
41086716 |
T |
|
| Q |
638 |
tgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttcc-ttttggactatcttaagggtctggtctaagtgg |
736 |
Q |
| |
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|||||||||||||||| |||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||| ||| ||| |
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| T |
41086717 |
tgaggtacctattcctctgaattcataatggaggtgttgctagtgtattagagttctcctggttcctttttggactattgtaagggtctggtgtaaatgg |
41086816 |
T |
|
| Q |
737 |
tggaatacttatgtgtgtat |
756 |
Q |
| |
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||||||||| |||||||||| |
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| T |
41086817 |
tggaatactgatgtgtgtat |
41086836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 41074697 - 41074818
Alignment:
| Q |
18 |
tttcctagtggtgtgggattgcaaattgtcaatagcttcacctgttcttctggttgatcagaatttatctgtatgaaaggtgagaaactgttttgtacct |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41074697 |
tttcctagtggtgtgggattgcaaattgtcaatagcttcacctgttcttctggttgatcagaatttatctgtatgaaaggtgagaaactgttttgtacct |
41074796 |
T |
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| Q |
118 |
ctggtgtgtcagatcatttatg |
139 |
Q |
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|||||||||||||||||||||| |
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| T |
41074797 |
ctggtgtgtcagatcatttatg |
41074818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 6e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 506 - 756
Target Start/End: Original strand, 48297170 - 48297418
Alignment:
| Q |
506 |
ttggattatttggtggtttttaagcatgtctgtgttactactttcaaggagtaacaaaggttattggtaccatgaaggcaaatttgattggtatccggtt |
605 |
Q |
| |
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|||||||||||||||||||||||| |||| | |||| |||||||||||||| |||||||||| |||| | |||| ||||||||||||||||| || |
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| T |
48297170 |
ttggattatttggtggtttttaagtatgtttatgtttctactttcaaggagcaacaaaggtt---ggtatccgaaaggaaaatttgattggtatcctatt |
48297266 |
T |
|
| Q |
606 |
attgagtggttgttttttggagtatacatgagtgaggtacctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctggttcctt |
705 |
Q |
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||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
48297267 |
attgattggctgttttttggagtatacatgattgaggtacctattcctatgaattcatgatggaggtgatgctagtgtattagagttctcctagttcctt |
48297366 |
T |
|
| Q |
706 |
-ttggactatcttaagggtctggtctaagtggtggaatacttatgtgtgtat |
756 |
Q |
| |
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||||| ||| ||||||||| || |||| |||||||||||||||||||||| |
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| T |
48297367 |
cctggaccatcgtaagggtctagtgtaagcggtggaatacttatgtgtgtat |
48297418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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