View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_20 (Length: 502)
Name: NF17452_high_20
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 29146841 - 29147307
Alignment:
| Q |
16 |
atctcaatatagtgttaatata--gtgcagcacaagtgttaaacatttaggtttcttatttgatcgatgtcggtgcctataaaaaatatgtgttatgaga |
113 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||| ||| |
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| T |
29146841 |
atctcaatatagtgttaatatatagtgcagcacaagtgttaaa----------tcttatttgatcgatgtcgatacctataaaaaacttgtgttatcaga |
29146930 |
T |
|
| Q |
114 |
ggtcaagttttaataggcactgacatcgctcaatcaccaattatcatatgtacatctttaaatttagttgcgattaactcaaatattttcataatatttg |
213 |
Q |
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| |||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29146931 |
gatcaaattttaataggcactgacatcgctcaatccctaattatcatatgtacatctttaaatttagtcgcgattaactcaaatattttcataatatttg |
29147030 |
T |
|
| Q |
214 |
ataacttaacaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147031 |
ataacttaacaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatt |
29147130 |
T |
|
| Q |
314 |
tgcacattcttaacctctataatattcaggtatctaaattactttaagataaatttaatttagttacataataaataaactaatctgacatatatagagt |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147131 |
tgcacattcttaacctctataatattcaggtatctaaattactttaagataaatttaatttagttacataataaataaactaatctgacatatatagagt |
29147230 |
T |
|
| Q |
414 |
catagatagatacataaaattctgaat--aaattactacagaatggagaatttgaagattggaacatggggtggtag |
488 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29147231 |
catagatagatacataaaattctgaataaaaattactacagaatggagaatttgaagattggaacatggggtggtag |
29147307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 29224615 - 29224492
Alignment:
| Q |
223 |
caggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacattc |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||| | |||||| |
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| T |
29224615 |
caggatgacaatggctctagggttattctattacggtcttcgagacacaactgctacttattccgtcaactttctcaacttggttcctatattgacattc |
29224516 |
T |
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| Q |
323 |
ttaacctctataatattcaggtat |
346 |
Q |
| |
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||||| ||||| |||| ||||||| |
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| T |
29224515 |
ttaacttctatcatatgcaggtat |
29224492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 450 - 488
Target Start/End: Complemental strand, 29224418 - 29224380
Alignment:
| Q |
450 |
cagaatggagaatttgaagattggaacatggggtggtag |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
29224418 |
cagaatggagaatttgaagattggaacatggggtggtag |
29224380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 354
Target Start/End: Complemental strand, 38852170 - 38852070
Alignment:
| Q |
254 |
tatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacattcttaacctctataatattcaggtatctaaatt |
353 |
Q |
| |
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|||||| ||||||||||| |||| | ||| | |||||||||||||||| | ||||| ||||||||||| ||| | || ||||||||||| |||||| |
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| T |
38852170 |
tatggtattcgagacacatctgccacatatgctctcaattttctcaacttaattcctatctgcacattcttgaccgccatcttattcaggtatttaaatt |
38852071 |
T |
|
| Q |
354 |
a |
354 |
Q |
| |
|
| |
|
|
| T |
38852070 |
a |
38852070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 222 - 384
Target Start/End: Complemental strand, 5304319 - 5304157
Alignment:
| Q |
222 |
acaggatgacaatggctctagggttattctattatggtcttcgagacacaactgctgcttattcagtcaattttctcaacttggtacctatttgcacatt |
321 |
Q |
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||||||||||||||||| | || ||||||||||||||||| ||||||||| ||||| ||||| | ||||| |||||||||||||| || |||||||| || |
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| T |
5304319 |
acaggatgacaatggcttttggattattctattatggtctccgagacacatctgctacttatgctgtcaactttctcaacttggttcccatttgcacctt |
5304220 |
T |
|
| Q |
322 |
cttaacctctataatattcaggtatctaaattactttaagataaatttaatttagttacataa |
384 |
Q |
| |
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||| || ||||| |||| |||||||| |||||| || |||| | ||| ||||||| ||||||| |
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| T |
5304219 |
cttgacttctatcatatgcaggtatccaaattagttaaagacacattaaatttagctacataa |
5304157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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