View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_23 (Length: 457)
Name: NF17452_high_23
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_23 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 18 - 447
Target Start/End: Complemental strand, 48236065 - 48235636
Alignment:
| Q |
18 |
agcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcggaaaaataactctaagcctctatcatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48236065 |
agcatgtcctgagcattgttgtttggtgtatgagtacatggaaaacggtaccttagaagatagattatttcggaaaaataactctaagcctctatcatgg |
48235966 |
T |
|
| Q |
118 |
caaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235965 |
caaaaaaggttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaa |
48235866 |
T |
|
| Q |
218 |
acattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacat |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235865 |
acattttgttagacaaaaattacgtgagcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacat |
48235766 |
T |
|
| Q |
318 |
gacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaaatcagatatatattcattagggataatgcta |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48235765 |
gacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatgttaacaccaaaatcagatatatattcattagggataatgcta |
48235666 |
T |
|
| Q |
418 |
ctgcagataatcacagccaggcctcctatg |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
48235665 |
ctgcagataatcacagccaggcctcctatg |
48235636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 163 - 378
Target Start/End: Complemental strand, 50439550 - 50439335
Alignment:
| Q |
163 |
ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaagtcgctgatgtcg |
262 |
Q |
| |
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||||||||||||||||| ||||| || || || ||| ||||| | |||||| |||||| ||| |||||| ||| || || |||| | |||||| | |
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| T |
50439550 |
ttccttcaccaaacaaaaccagaacctatagtacatagagacttgaaaccaggaaacatcttgctagacagaaactatgtagccaaaattagtgatgttg |
50439451 |
T |
|
| Q |
263 |
gtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatca |
362 |
Q |
| |
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|| | |||||| | ||||| || ||||| || ||||| ||||| |||||| |||||| || | || |||||||| |||||||| ||||| |||||||| |
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| T |
50439450 |
gtttggcaagacttgttccgccatctgtggccgacagtgtgacgcaatatcgcatgacggcaacagcaggaacattctgttatatagatcctgagtatca |
50439351 |
T |
|
| Q |
363 |
acaaacaggaatgtta |
378 |
Q |
| |
|
||||||||||||||| |
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|
| T |
50439350 |
gcaaacaggaatgtta |
50439335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 4e-51; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 145 - 443
Target Start/End: Original strand, 3686562 - 3686860
Alignment:
| Q |
145 |
attgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtga |
244 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| |||| || ||| |||||||||||||| | |||||| | ||||||||||||| || | |
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| T |
3686562 |
attgcaacagcacttcttttccttcaccaaacaaaaccagaagcaattgttcatagagaccttaaaccagccaacattctcttagacaaaaattttgtta |
3686661 |
T |
|
| Q |
245 |
gcaaagtcgctgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgtta |
344 |
Q |
| |
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||||| | |||||| ||| | ||||||||||| || |||||||||||||| || ||||||||| |||||||| ||| ||||||||||| ||||| |
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| T |
3686662 |
gcaaaataagtgatgttggtttagcaagattagtaccaccttctgtagctgattctgtcacacaatatcacatgactgaagcagctggaacattatgtta |
3686761 |
T |
|
| Q |
345 |
tattgatcccgagtatcaacaaacaggaatgttaacaccaaaatcagatatatattcattagggataatgctactgcagataatcacagccaggcctcc |
443 |
Q |
| |
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|||||||| ||||||||| | ||||||| |||||| ||||||||||||| ||||| |||||||||||| | || || || |||||||| | |||||| |
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|
| T |
3686762 |
cattgatccagagtatcaaaatacaggaaaattaacaacaaaatcagatatttattctttagggataatgtttcttcaaattatcacagctaagcctcc |
3686860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 377
Target Start/End: Original strand, 1273956 - 1274170
Alignment:
| Q |
163 |
ttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattacgtgagcaaag-tcgctgatgtc |
261 |
Q |
| |
|
||||| ||||||||||| || |||||| | || ||| |||||||||||||| ||||||| ||| | ||| || ||||| |||||| | |||||| |
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| T |
1273956 |
ttcctccaccaaacaaaacctgagccactagtacatagagaccttaaaccagcaaacatcttgcttgaccgcaactacgtc-gcaaagattagtgatgtt |
1274054 |
T |
|
| Q |
262 |
ggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatc |
361 |
Q |
| |
|
||| | |||||| |||| || || || ||||| |||| |||||||||||| ||||| || ||||| |||||||| ||||| || ||||| ||||| | |
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| T |
1274055 |
ggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcctgagtacc |
1274154 |
T |
|
| Q |
362 |
aacaaacaggaatgtt |
377 |
Q |
| |
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|||| ||||||||||| |
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| T |
1274155 |
aacagacaggaatgtt |
1274170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 45728271 - 45728342
Alignment:
| Q |
304 |
acacaatattacatgacttcagctgctggaacattttgttatattgatcccgagtatcaacaaacaggaatg |
375 |
Q |
| |
|
||||||| || |||||| ||||| || |||||||| ||||||||||||||||||||||| |||||||||||| |
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|
| T |
45728271 |
acacaatgttgcatgacatcagcagcgggaacattctgttatattgatcccgagtatcagcaaacaggaatg |
45728342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 127 - 248
Target Start/End: Original strand, 42673868 - 42673989
Alignment:
| Q |
127 |
ttcaaaatagcagctgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgt |
226 |
Q |
| |
|
|||||||||||| | |||||||| || | ||||||||||||||||| ||||| ||||| || | |||||||| || || |||||| |||||||| | | |
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|
| T |
42673868 |
ttcaaaatagcatcagagattgcgacaggccttcttttccttcaccagacaaaaccagaaccggttgtgcatcgcgatctcaaaccagcaaacattctct |
42673967 |
T |
|
| Q |
227 |
tagacaaaaattacgtgagcaa |
248 |
Q |
| |
|
|||||| ||| ||||| ||||| |
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|
| T |
42673968 |
tagacagaaactacgtaagcaa |
42673989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 372
Target Start/End: Original strand, 42674072 - 42674113
Alignment:
| Q |
331 |
ggaacattttgttatattgatcccgagtatcaacaaacagga |
372 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||| |
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| T |
42674072 |
ggaacatttttttatattgatccggagtatcaacaaacagga |
42674113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 248
Target Start/End: Original strand, 6516733 - 6516840
Alignment:
| Q |
141 |
tgagattgcaactgcacttcttttccttcaccaaacaaagccagagccaatcgtgcatcgagaccttaaaccatcaaacattttgttagacaaaaattac |
240 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||||| ||||| || ||||| || | |||||| ||||||| | ||||||||||| ||| |
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|
| T |
6516733 |
tgagattgccactggccttcttttccttcaccaatcaaagccagatccaatagtacatcgtgatatgaaaccaggaaacattctcttagacaaaaactac |
6516832 |
T |
|
| Q |
241 |
gtgagcaa |
248 |
Q |
| |
|
|| ||||| |
|
|
| T |
6516833 |
gttagcaa |
6516840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 368
Target Start/End: Original strand, 6516920 - 6516960
Alignment:
| Q |
328 |
gctggaacattttgttatattgatcccgagtatcaacaaac |
368 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
6516920 |
gctggaacattttgctacattgatcctgagtatcaacaaac |
6516960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 377
Target Start/End: Original strand, 56 - 178
Alignment:
| Q |
255 |
tgatgtcggtctcgcaagattagttcctccttctgtagctgacagcgtgacacaatattacatgacttcagctgctggaacattttgttatattgatccc |
354 |
Q |
| |
|
|||||| ||| | |||||| |||| || || || ||||| |||| |||||||||||| ||||| || ||||| |||||||| ||||| || ||||| |
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|
| T |
56 |
tgatgttggtttggcaagactagtaccgccatcagtagcagacaatgtgacacaatatcgaatgacatcggctgccggaacattctgttacatagatcct |
155 |
T |
|
| Q |
355 |
gagtatcaacaaacaggaatgtt |
377 |
Q |
| |
|
||||| ||||| ||||||||||| |
|
|
| T |
156 |
gagtaccaacagacaggaatgtt |
178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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