View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_high_29 (Length: 437)

Name: NF17452_high_29
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_high_29
NF17452_high_29
[»] chr3 (2 HSPs)
chr3 (74-417)||(39702054-39702398)
chr3 (82-120)||(22512760-22512798)
[»] chr4 (3 HSPs)
chr4 (74-417)||(42884414-42884766)
chr4 (74-186)||(32103579-32103691)
chr4 (336-388)||(9475888-9475941)
[»] chr7 (4 HSPs)
chr7 (156-282)||(21526079-21526207)
chr7 (156-249)||(42452033-42452131)
chr7 (74-121)||(42452207-42452254)
chr7 (74-120)||(21525990-21526036)
[»] chr5 (2 HSPs)
chr5 (303-383)||(19320989-19321070)
chr5 (303-388)||(12036491-12036577)
[»] chr1 (1 HSPs)
chr1 (303-388)||(41945955-41946040)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 74 - 417
Target Start/End: Complemental strand, 39702398 - 39702054
Alignment:
Q  74 agtcaagcaattacctttccatttagattggaaaaacaaagagtgaacnnnnnnnngggttttttgtttgatattctctgaaagagagaagggagtgccg 173  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||        ||| |||| |||||||||||||| ||||||||||||||||||||    
T  39702398 agtcaagcaattacctttccatttagattggaaaaacaaagactgaacaagaaaaaggggtttt-gtttgatattctctaaaagagagaagggagtgccg 39702300  T
Q  174 gagtgagtggtcggcgccggcagtctcgcggtgggaaatcgatgagaatcgacggtgacactgtgatttgggttgaagctaatgggtttgttaggtcgcg 273  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||    
T  39702299 gagtgagtggtcggcgctggcagtctcgcggtgggaaatcgatgagaatcgacggtgacactatgatttaggttgaagctaatggatttgttaggtcgcg 39702200  T
Q  274 ttttgaa--agggagaaagaaggagtgtaaggtgtaacagaggaagggaaaaaggcttagaatgctgggtgggtcagttgaaaataataaaataagctga 371  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||    
T  39702199 ttttgaaagagggagaaagaaggagtgtaaggtgtaacagaggaaggggaaaaggctgagaatgctgggtgagccagttgaaaataataaaataagctga 39702100  T
Q  372 ggtatttttgtaatttcacnnnnnnngggggtgggccatggcccac 417  Q
    |||||||||||||||||||       || |||||||||||||||||    
T  39702099 ggtatttttgtaatttcactttttttggtggtgggccatggcccac 39702054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 120
Target Start/End: Original strand, 22512760 - 22512798
Alignment:
Q  82 aattacctttccatttagattggaaaaacaaagagtgaa 120  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  22512760 aattacctttccatttagataggaaaaacagagagtgaa 22512798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 74 - 417
Target Start/End: Original strand, 42884414 - 42884766
Alignment:
Q  74 agtcaagcaattacctttccatttagattggaaaaacaaagagtgaacnnnnnnnngggttttttgtttgatattctctgaa----agagagaagggagt 169  Q
    |||||| |||||||||||| |||| |||||||||||||||||||||||        |||||||| |||||||||||||||||    ||||||||||||||    
T  42884414 agtcaaacaattacctttctatttggattggaaaaacaaagagtgaacaagaaaaagggttttt-gtttgatattctctgaatgagagagagaagggagt 42884512  T
Q  170 gccggagtgagtggtcggcgccggcagtctcgcggtgggaaatcgatgagaatcgacggtga---cactgtgatttgggttgaagctaatgggtttgtta 266  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| ||||||||||||||||||||||    
T  42884513 gtcggattgagtggtcggcgccggcagtctcgcggtgggaaatcgatgagaatcgacggtgacaccactgtgatttgagttgaagctaatgggtttgtta 42884612  T
Q  267 ggtcgcgttttgaa--agggagaaagaaggagtgtaaggtgtaacagaggaagggaaaaaggcttagaatgctgggtgggtcagttgaaaataataaaat 364  Q
    |||| |||||||||  ||||||||||||||||||||| ||||||||||||||||| ||||||||   |||||||| ||||||||||||||||||||||||    
T  42884613 ggtcacgttttgaaagagggagaaagaaggagtgtaacgtgtaacagaggaaggggaaaaggctggaaatgctggatgggtcagttgaaaataataaaat 42884712  T
Q  365 aagctgag-gtatttttgtaatttcacnnnnnnngggggtgggccatggcccac 417  Q
    ||||| || ||||||||||||||||||       ||||||||||||||||||||    
T  42884713 aagctaagagtatttttgtaatttcactttttttgggggtgggccatggcccac 42884766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 186
Target Start/End: Original strand, 32103579 - 32103691
Alignment:
Q  74 agtcaagcaattacctttccatttagattggaaaaacaaagagtgaacnnnnnnnngggttttttgtttgatattctctgaa--agagagaagggagtgc 171  Q
    ||||||| |||||||||||||||| ||||||||||||| ||||||||          |||||||| |||||| |||||||||  |||||||||||||||     
T  32103579 agtcaagaaattacctttccatttggattggaaaaacagagagtgaa--aagaaaaaggttttttctttgatcttctctgaatgagagagaagggagtgt 32103676  T
Q  172 cggagtgagtggtcg 186  Q
    ||||| |||||||||    
T  32103677 cggagcgagtggtcg 32103691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 336 - 388
Target Start/End: Original strand, 9475888 - 9475941
Alignment:
Q  336 ctgggtgggtcagttgaaaataataaaataagctga-ggtatttttgtaatttc 388  Q
    ||||||||| || ||||||| ||||||||||||||| |||||||||||||||||    
T  9475888 ctgggtgggccaattgaaaaaaataaaataagctgagggtatttttgtaatttc 9475941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 5e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 156 - 282
Target Start/End: Original strand, 21526079 - 21526207
Alignment:
Q  156 agagagaagggagtgccggagtgagtggtcggcgccggcagtctcgcggtgggaaatcgatgagaatcgacggtgacactgtgatttgggttgaagctaa 255  Q
    ||||||||||||||||||||||||||| | ||||||||  ||| || ||  ||||| || |||||||||||||||||||||||||||||||||||| | |    
T  21526079 agagagaagggagtgccggagtgagtgcttggcgccggaggtcgcgtggccggaaa-cggtgagaatcgacggtgacactgtgatttgggttgaaggtta 21526177  T
Q  256 tgggtttg---ttaggtcgcgttttgaaag 282  Q
    |||| |||   |||||||||||||| ||||    
T  21526178 tgggattgtaattaggtcgcgttttcaaag 21526207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 249
Target Start/End: Complemental strand, 42452131 - 42452033
Alignment:
Q  156 agagagaagggagtgccggagtgagtggtcggcgccggcagtctcgcggtgggaaa-tcgatgagaatcgac----ggtgacactgtgatttgggttga 249  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||| | ||| ||| ||| ||||| |    |||||||||||||||||||||||    
T  42452131 agagagaagggagtgccggagtgagtggtcggcgccggaggtctcgcggtcgaaaagtcggtgaaaatcggcgtgaggtgacactgtgatttgggttga 42452033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 42452254 - 42452207
Alignment:
Q  74 agtcaagcaattacctttccatttagattggaaaaacaaagagtgaac 121  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||    
T  42452254 agtcaagcaattacctttccatttggattggaaaaacagagagtgaac 42452207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 21525990 - 21526036
Alignment:
Q  74 agtcaagcaattacctttccatttagattggaaaaacaaagagtgaa 120  Q
    ||||||| |||||| ||||||||| ||||||||||||| ||||||||    
T  21525990 agtcaagaaattacatttccatttggattggaaaaacagagagtgaa 21526036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 383
Target Start/End: Complemental strand, 19321070 - 19320989
Alignment:
Q  303 gtgtaacagaggaagggaaaaaggcttagaatgctgggtgggtcagttgaaaataataaaataagctga-ggtatttttgta 383  Q
    |||||| |||||||||| ||||||||   ||||||||||||| || ||||||| ||||||  ||||||| ||||||||||||    
T  19321070 gtgtaatagaggaaggggaaaaggctagaaatgctgggtgggccatttgaaaaaaataaataaagctgagggtatttttgta 19320989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 12036577 - 12036491
Alignment:
Q  303 gtgtaacagaggaagggaaaaaggcttagaatgctgggtgggtcagttgaaaataataaaataagctga-ggtatttttgtaatttc 388  Q
    ||||||| ||||||||| ||||||||  |||||||||||||| || |||| || ||||||  |||| || |||||||||||| ||||    
T  12036577 gtgtaactgaggaaggggaaaaggctgggaatgctgggtgggccatttgagaaaaataaatcaagcagagggtatttttgtagtttc 12036491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 41946040 - 41945955
Alignment:
Q  303 gtgtaacagaggaagggaaaaaggcttagaatgctgggtgggtcagttgaaaataataaaataagctgaggtatttttgtaatttc 388  Q
    |||||| ||||||||||||||||||| |||||||||||||   || |||| || ||||||  || ||| |||||||||||| ||||    
T  41946040 gtgtaatagaggaagggaaaaaggctgagaatgctgggtgaaccatttgagaaaaataaatcaaactggggtatttttgtagtttc 41945955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University