View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_high_31 (Length: 430)

Name: NF17452_high_31
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_high_31
NF17452_high_31
[»] chr1 (24 HSPs)
chr1 (188-412)||(4471607-4471832)
chr1 (92-181)||(24883180-24883269)
chr1 (105-183)||(34622550-34622628)
chr1 (92-181)||(3385523-3385612)
chr1 (105-181)||(24882971-24883047)
chr1 (93-180)||(27171800-27171887)
chr1 (92-174)||(5771915-5771997)
chr1 (92-174)||(49777035-49777117)
chr1 (105-182)||(3385307-3385384)
chr1 (105-173)||(33156679-33156747)
chr1 (105-171)||(33400865-33400931)
chr1 (92-181)||(49776819-49776908)
chr1 (92-143)||(13946960-13947011)
chr1 (92-179)||(34969987-34970074)
chr1 (88-151)||(34970193-34970256)
chr1 (92-178)||(37948791-37948877)
chr1 (92-143)||(27172011-27172062)
chr1 (116-181)||(33156456-33156520)
chr1 (88-184)||(37948996-37949083)
chr1 (92-151)||(13947134-13947193)
chr1 (105-172)||(33401081-33401148)
chr1 (92-143)||(43297063-43297114)
chr1 (95-151)||(49618124-49618181)
chr1 (100-148)||(38338887-38338935)
[»] chr6 (6 HSPs)
chr6 (88-181)||(22748796-22748889)
chr6 (92-181)||(22748588-22748677)
chr6 (105-181)||(16125522-16125598)
chr6 (107-182)||(16125749-16125824)
chr6 (92-143)||(24565314-24565365)
chr6 (105-140)||(33277347-33277382)
[»] chr3 (26 HSPs)
chr3 (88-178)||(43797560-43797650)
chr3 (92-180)||(4041395-4041483)
chr3 (92-172)||(43797361-43797441)
chr3 (106-183)||(8799315-8799392)
chr3 (105-181)||(38499819-38499895)
chr3 (105-174)||(53197208-53197277)
chr3 (105-181)||(38500046-38500122)
chr3 (92-151)||(46883624-46883683)
chr3 (92-174)||(25349922-25350004)
chr3 (92-181)||(53196988-53197077)
chr3 (92-172)||(29828893-29828973)
chr3 (107-182)||(34937413-34937489)
chr3 (92-144)||(46883452-46883504)
chr3 (92-151)||(8657429-8657488)
chr3 (92-151)||(8799528-8799587)
chr3 (105-180)||(43797866-43797941)
chr3 (92-144)||(20383247-20383299)
chr3 (105-176)||(10696500-10696572)
chr3 (100-144)||(43797680-43797724)
chr3 (105-151)||(10697230-10697277)
chr3 (106-181)||(54420973-54421048)
chr3 (104-173)||(12772484-12772554)
chr3 (106-151)||(33029551-33029597)
chr3 (105-151)||(43714199-43714245)
chr3 (110-178)||(35274444-35274512)
chr3 (105-181)||(48346204-48346280)
[»] chr2 (24 HSPs)
chr2 (88-181)||(20296262-20296355)
chr2 (92-183)||(22563208-22563299)
chr2 (100-181)||(4371454-4371535)
chr2 (92-174)||(21265570-21265651)
chr2 (92-181)||(22563422-22563511)
chr2 (92-172)||(12232572-12232651)
chr2 (92-174)||(20296628-20296710)
chr2 (100-182)||(21265782-21265864)
chr2 (108-181)||(17200078-17200151)
chr2 (106-182)||(29893023-29893099)
chr2 (95-167)||(17200293-17200364)
chr2 (105-181)||(34645547-34645623)
chr2 (92-181)||(34645758-34645847)
chr2 (107-179)||(17737530-17737602)
chr2 (105-143)||(4371548-4371586)
chr2 (105-143)||(33491358-33491396)
chr2 (92-157)||(156972-157036)
chr2 (100-143)||(8237882-8237925)
chr2 (105-151)||(4682867-4682913)
chr2 (134-184)||(21612632-21612682)
chr2 (105-151)||(32222057-32222103)
chr2 (112-180)||(4682757-4682825)
chr2 (100-144)||(12232782-12232826)
chr2 (129-169)||(33491417-33491457)
[»] chr8 (17 HSPs)
chr8 (95-181)||(6911029-6911115)
chr8 (88-182)||(15009066-15009160)
chr8 (100-181)||(14999171-14999252)
chr8 (92-151)||(6911241-6911300)
chr8 (100-183)||(43801691-43801774)
chr8 (92-182)||(16324843-16324933)
chr8 (95-174)||(8489380-8489459)
chr8 (105-182)||(43801469-43801546)
chr8 (108-174)||(41403988-41404054)
chr8 (88-181)||(41722035-41722128)
chr8 (100-180)||(41403760-41403840)
chr8 (92-151)||(16325056-16325117)
chr8 (106-149)||(22781087-22781130)
chr8 (105-151)||(22781277-22781323)
chr8 (92-150)||(40621739-40621797)
chr8 (105-182)||(41721827-41721904)
chr8 (105-181)||(27926289-27926365)
[»] chr5 (16 HSPs)
chr5 (92-182)||(31193964-31194054)
chr5 (92-181)||(31194177-31194266)
chr5 (92-182)||(17370066-17370156)
chr5 (92-181)||(8754658-8754747)
chr5 (92-181)||(14076881-14076970)
chr5 (100-181)||(32347117-32347198)
chr5 (92-185)||(36955506-36955599)
chr5 (105-181)||(36955303-36955379)
chr5 (105-183)||(9862217-9862295)
chr5 (92-151)||(42546561-42546620)
chr5 (92-145)||(42546385-42546438)
chr5 (105-157)||(39634829-39634880)
chr5 (107-179)||(43449469-43449541)
chr5 (105-151)||(2665667-2665713)
chr5 (92-174)||(39635015-39635096)
chr5 (107-182)||(43450145-43450220)
[»] chr7 (18 HSPs)
chr7 (92-181)||(35207178-35207267)
chr7 (92-183)||(19318360-19318451)
chr7 (105-181)||(35207400-35207476)
chr7 (105-181)||(25048249-25048325)
chr7 (113-181)||(39983870-39983938)
chr7 (113-182)||(19318452-19318521)
chr7 (105-182)||(35363317-35363394)
chr7 (107-174)||(2834426-2834493)
chr7 (95-174)||(19318154-19318233)
chr7 (92-147)||(6408466-6408521)
chr7 (105-173)||(6408261-6408329)
chr7 (107-183)||(34589335-34589411)
chr7 (92-184)||(26903429-26903517)
chr7 (105-143)||(39983779-39983817)
chr7 (105-178)||(45560626-45560699)
chr7 (92-151)||(48006336-48006395)
chr7 (92-170)||(29474625-29474702)
chr7 (111-189)||(48737933-48738011)
[»] chr4 (29 HSPs)
chr4 (92-181)||(17914960-17915049)
chr4 (100-181)||(9551445-9551526)
chr4 (105-174)||(54316054-54316123)
chr4 (92-179)||(5465855-5465942)
chr4 (92-181)||(7061972-7062061)
chr4 (92-181)||(11789859-11789948)
chr4 (106-181)||(50544256-50544331)
chr4 (105-181)||(8538352-8538428)
chr4 (92-174)||(46993074-46993156)
chr4 (124-185)||(35256138-35256199)
chr4 (95-168)||(42475889-42475962)
chr4 (106-174)||(23655294-23655362)
chr4 (92-143)||(3556577-3556628)
chr4 (92-151)||(11790074-11790133)
chr4 (96-142)||(17914752-17914798)
chr4 (105-166)||(21785923-21785984)
chr4 (92-148)||(5466061-5466117)
chr4 (105-149)||(19037945-19037989)
chr4 (106-174)||(50551478-50551546)
chr4 (100-171)||(3556376-3556447)
chr4 (95-182)||(24673936-24674023)
chr4 (105-143)||(26297352-26297390)
chr4 (100-174)||(32591168-32591242)
chr4 (104-151)||(1856705-1856752)
chr4 (108-151)||(19075748-19075791)
chr4 (95-174)||(46993284-46993363)
chr4 (109-150)||(32160342-32160383)
chr4 (108-143)||(19075031-19075067)
chr4 (105-173)||(32591374-32591442)
[»] scaffold0417 (1 HSPs)
scaffold0417 (107-181)||(9303-9377)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 188 - 412
Target Start/End: Original strand, 4471607 - 4471832
Alignment:
Q  188 gagagtattttgttcat-aaaaaatcttcaaactcagaaacccattaatgttcatcccttcttcagccccacccatcactccatcatcatcccttctcca 286  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  4471607 gagagtattttgttcattaaaaaatcttcaaactccgaaacccattaatgttcaacccttcttcagccccacccatcactccatcatcatcccttctcca 4471706  T
Q  287 aggacaaaatatgaggagtaggagggtgaattttcagaatgtagttgaaattattgagcagcaatgaatggactcaaattagtaaagaactttccgaaga 386  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  4471707 aggacaaaatttgaggagtaggagggtgaattttcagaatgtagttgaaaatgttgagcagcaatgaatggactcaaattagtaaagaactttccgaaga 4471806  T
Q  387 aatattagtcaatttgaagagtagac 412  Q
    |||||| |||||||||||||||||||    
T  4471807 aatatttgtcaatttgaagagtagac 4471832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 24883180 - 24883269
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||| ||||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||||||    
T  24883180 aaccgttagatatttttttgccacatatcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaacatacccgaactc 24883269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 34622550 - 34622628
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaa 183  Q
    |||||||||||||||||| ||| |||||| |||||||||||| |||| |||||||||||||||||||||| ||||||||    
T  34622550 ttttttgccacatgtcttgcattcaaaccttaaatggagtaactggagcttagtctaaatggagcatacccgaactcaa 34622628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 3385523 - 3385612
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||| |||||| |||||| |||| |||||||||||||||||||||||||||| ||| | |||||||||||||||| ||||||    
T  3385523 aaccgttagatatttttttaccacatatcttacatccaaaccctaaatggagtaaatggagcttggcctaaatggagcatacccgaactc 3385612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 24883047 - 24882971
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||||    
T  24883047 ttttttgccacgtgtcttgcatccaaaccctaaatggagtaaatggagattagcctaaatggagcatacccgaactc 24882971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 27171887 - 27171800
Alignment:
Q  93 accgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaact 180  Q
    |||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||| | ||||| ||||||| |||||||| |||||    
T  27171887 accgttagatatttttttgccacatgtcttacatccaaaccataaatggagtaaatgaagcttagcctaaatgaagcatacccgaact 27171800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 5771997 - 5771915
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    ||||||| |||| |||||||||| || |||| ||| ||||| |||||||||||||||| | ||||||||||||||||||||||    
T  5771997 aaccgttagatatttttttgccatatatcttacattcaaactctaaatggagtaaatgaagcttagtctaaatggagcatacc 5771915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 49777035 - 49777117
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    ||||||| |||| ||||||| |||||||||| |||||||||||||||| || ||||||||  |||| ||||||||||||||||    
T  49777035 aaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatagaataaatggagtttagcctaaatggagcatacc 49777117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 3385384 - 3385307
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    |||||||||||||||||| |||||||||||||||||| ||||| | | ||||| ||||||| |||||||| |||||||    
T  3385384 ttttttgccacatgtcttacatccaaaccctaaatggggtaaacgaagcttagcctaaatgaagcatacccgaactca 3385307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 33156679 - 33156747
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatac 173  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  | ||||| |||||||||||||||    
T  33156679 ttttttgccacatgtcttgtatccaaaccctaaatggagtaaataaagcttagcctaaatggagcatac 33156747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 33400931 - 33400865
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcat 171  Q
    |||||||||||||| ||| |||||||||| ||||||||||||||||| |||||  ||||||||||||    
T  33400931 ttttttgccacatgccttacatccaaaccttaaatggagtaaatggagcttagcttaaatggagcat 33400865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 49776908 - 49776819
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||  ||| |||||| ||||||||||| |||||||| ||||||||||||||||  | |||||  ||||||||||||||| ||||||    
T  49776908 aaccgttcaatatttttttaccacatgtcttgcatccaaatcctaaatggagtaaataaagcttagcttaaatggagcatacccgaactc 49776819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 13947011 - 13946960
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  13947011 aaccgttagatatttttttgccacatgtcttacatccaaaccctaaatggag 13946960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 34970074 - 34969987
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaac 179  Q
    ||||||| |||| |||||| ||||||||||| |||||||| ||||||| |||||||||||  |||  ||||||| |||||||| ||||    
T  34970074 aaccgttagatatttttttaccacatgtcttgcatccaaatcctaaattgagtaaatggagtttaacctaaatgaagcatacccgaac 34969987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 151
Target Start/End: Original strand, 34970193 - 34970256
Alignment:
Q  88 tcttaaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||||||| |||| |||||||||||||||||| |||||||||| |||||  ||||||||||    
T  34970193 tcttaaccgttagatatttttttgccacatgtcttacatccaaaccttaaataaagtaaatgga 34970256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 37948877 - 37948791
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaa 178  Q
    ||||||| |||| |||||||| ||||||||| |||||||||| ||||| ||||||||| | ||||   ||||||||||||| |||||    
T  37948877 aaccgttagatatttttttgcaacatgtcttacatccaaaccttaaattgagtaaatgaagcttaacttaaatggagcatatctgaa 37948791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 27172011 - 27172062
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    ||||||| |||| |||||||||||||||||| |||||||||| |||||||||    
T  27172011 aaccgttagatatttttttgccacatgtcttacatccaaaccttaaatggag 27172062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 33156520 - 33156456
Alignment:
Q  116 atgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| ||||||||| |||||||||||||||||| | ||| || ||||||||||||| ||||||    
T  33156520 atgtcttacatccaaactctaaatggagtaaatggagcctagcct-aatggagcatacccgaactc 33156456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 37948996 - 37949083
Alignment:
Q  88 tcttaaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaat 184  Q
    |||||||| || |||| || ||||||||||||||| ||||||| ||||||||||||         |||||  |||||||||||||||||||||||||    
T  37948996 tcttaaccattagatatttgtttgccacatgtcttacatccaagccctaaatggag---------cttagcttaaatggagcatacctgaactcaat 37949083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 13947134 - 13947193
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||  ||| |||||| ||||||||||| ||||||||| ||||||||| ||||||||    
T  13947134 aaccgttacatatttttttaccacatgtcttacatccaaacgctaaatggaataaatgga 13947193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 33401081 - 33401148
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcata 172  Q
    |||||||||||||||||| |||| ||||| |||||  ||||||| || ||||| ||||||| ||||||    
T  33401081 ttttttgccacatgtcttacatctaaaccttaaataaagtaaattgagcttagcctaaatgtagcata 33401148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 43297063 - 43297114
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    ||||||| |||| ||||||| |||||||||| |||||||| |||||||||||    
T  43297063 aaccgttagatatttttttggcacatgtcttgcatccaaatcctaaatggag 43297114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 49618124 - 49618181
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaa-ccctaaatggagtaaatgga 151  Q
    ||||||||  || |||||||||||||||| ||||||| ||||||||||| ||||||||    
T  49618124 cgttggatgtttgtttgccacatgtctttaatccaaacccctaaatggactaaatgga 49618181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 148
Target Start/End: Original strand, 38338887 - 38338935
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaat 148  Q
    |||| |||||||||||||||||| ||||||||||  ||||||| |||||    
T  38338887 gatatttttttgccacatgtcttacatccaaacctcaaatggaataaat 38338935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 22748796 - 22748889
Alignment:
Q  88 tcttaaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22748796 tcttaaccgttggatgcttttttaccacatgtctttcatccaaatcctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 22748889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 22748677 - 22748588
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||||| |||||||||||||||||| |||||||| | ||||||||||||||||| | ||| |||||| ||||||||| ||||||    
T  22748677 aaccgttggatatttttttgccacatgtcttgcatccaaatcttaaatggagtaaatggagcatagcctaaattgagcatacccgaactc 22748588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 16125598 - 16125522
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||||||||||| ||||||||||||||||| | |||||| |  |||| |||||||||||||||| ||||||    
T  16125598 ttttttgccacatgtcttgcatccaaaccctaaatgaaataaatgaagtttagcctaaatggagcatacccgaactc 16125522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 16125749 - 16125824
Alignment:
Q  107 ttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    ||||| ||||| |||| ||||||| | |||||| ||||||||||| |||||||||||| ||||||| | |||||||    
T  16125749 ttttgtcacatatcttgcatccaagctctaaattgagtaaatggagcttagtctaaatagagcatatccgaactca 16125824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 24565314 - 24565365
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    ||||||| |||  |||||||||||||||||| |||| |||||||||||||||    
T  24565314 aaccgttagatgtttttttgccacatgtcttacatctaaaccctaaatggag 24565365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 140
Target Start/End: Complemental strand, 33277382 - 33277347
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatg 140  Q
    |||||||||||||||||| |||||||||||||||||    
T  33277382 ttttttgccacatgtcttgcatccaaaccctaaatg 33277347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 43797560 - 43797650
Alignment:
Q  88 tcttaaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaa 178  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  43797560 tcttaaccgttggatacttttttgtcacatgtctttcatccaaaccctaaatagagtaaatggatcttagcctaaatggagcatacctgaa 43797650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 180
Target Start/End: Original strand, 4041395 - 4041483
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaact 180  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||    
T  4041395 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaact 4041483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 43797441 - 43797361
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcata 172  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||    
T  43797441 aaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcata 43797361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 8799392 - 8799315
Alignment:
Q  106 tttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaa 183  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||    
T  8799392 tttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcctagcctaaatggagcatacccgaactcaa 8799315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 38499895 - 38499819
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  38499895 ttttttgccacatgtcttgtatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 38499819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 53197208 - 53197277
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||||||||||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||||||||    
T  53197208 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacc 53197277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 38500046 - 38500122
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||| ||||||    
T  38500046 tttttttccacatgtcttacatccaaaccctaattggagtaaatggagcttagcctaaatggagcatacccgaactc 38500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 46883624 - 46883683
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  46883624 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgga 46883683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 25349922 - 25350004
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    ||||||| |||  ||||||| |||||||||| |||||||||||||||| || |||||||| |||| | |||||||||||||||    
T  25349922 aaccgttagatgtttttttggcacatgtcttacatccaaaccctaaatagaataaatggagcttaatttaaatggagcatacc 25350004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 53197077 - 53196988
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||| ||||||||||||||| || |||||||||||||||| ||||||||| |  ||||  ||||||| ||||||| ||||||    
T  53197077 aaccgttagatatttttttgccacatgttttgcatccaaaccctaaatagagtaaatgaagtttagcttaaatggggcatacccgaactc 53196988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 29828893 - 29828973
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcata 172  Q
    ||||||| |||| ||||||||||||| |||| |||||||| |||||||||| |||||||| |||||  ||||| |||||||    
T  29828893 aaccgttagatatttttttgccacatatcttacatccaaatcctaaatggaataaatggagcttagcttaaatagagcata 29828973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 34937489 - 34937413
Alignment:
Q  107 ttttgccacatgtctttcatcca-aaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    |||||||||||||||| |||||| |||||||||| || |||||||| | | |||||||||||||||| |||||||||    
T  34937489 ttttgccacatgtcttgcatccataaccctaaatagactaaatggaacattgtctaaatggagcatatctgaactca 34937413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 46883504 - 46883452
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagt 144  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||    
T  46883504 aaccgttagatatttttttgccacatgtcttacatccaaaccctaaatggagt 46883452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Complemental strand, 8657488 - 8657429
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||| |||| || ||||||||||||||| ||| ||||||||||||||||||||||||    
T  8657488 aaccgttagatatttgtttgccacatgtcttgcattcaaaccctaaatggagtaaatgga 8657429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 8799528 - 8799587
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||  ||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  8799528 aaccgttatatatttttttgccacatgtcttgcatctaaaccctaaatggagtaaatgga 8799587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Original strand, 43797866 - 43797941
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaact 180  Q
    |||||||||||||||||| ||||||| ||||||||||||||||| |  |||||   ||||| ||||||||||||||    
T  43797866 ttttttgccacatgtcttgcatccaagccctaaatggagtaaatagcacttagcaaaaatgaagcatacctgaact 43797941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 20383247 - 20383299
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagt 144  Q
    ||||||| ||||||||||| ||||| ||||||||||||||| |||||||||||    
T  20383247 aaccgttagatacttttttaccacacgtctttcatccaaactctaaatggagt 20383299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 10696572 - 10696500
Alignment:
Q  105 ttttttgccacatgtctttcatccaaa-ccctaaatggagtaaatggatcttagtctaaatggagcatacctg 176  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||| || | |   ||||||||||||||||||    
T  10696572 ttttttgccacatgtcttgcatccaaacccctaaatggactaaattgagcattacctaaatggagcatacctg 10696500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 144
Target Start/End: Complemental strand, 43797724 - 43797680
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagt 144  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||    
T  43797724 gatatttttttgccacatgtcttacatccaaaccttaaatggagt 43797680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 10697230 - 10697277
Alignment:
Q  105 ttttttgccacatgtctttcatccaaa-ccctaaatggagtaaatgga 151  Q
    |||||||||||||||||| |||||||| ||||||||||| ||||||||    
T  10697230 ttttttgccacatgtcttgcatccaaacccctaaatggattaaatgga 10697277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 54421048 - 54420973
Alignment:
Q  106 tttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||||| ||| |||||  || |||||||||||||||| |  ||| | ||||||||||||||| ||||||    
T  54421048 tttttgccacatggcttgcatccgtacactaaatggagtaaatgaagtttaatataaatggagcatacccgaactc 54420973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 12772554 - 12772484
Alignment:
Q  104 cttttttgccacatgtctttcatccaa-accctaaatggagtaaatggatcttagtctaaatggagcatac 173  Q
    ||||||||||||||||| ||||| ||| ||| |||| ||||||||||||||| |   ||||||||||||||    
T  12772554 cttttttgccacatgtcattcatgcaataccataaacggagtaaatggatctaatggtaaatggagcatac 12772484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 33029551 - 33029597
Alignment:
Q  106 tttttgccacatgtctttcatccaa-accctaaatggagtaaatgga 151  Q
    ||||||||||||||||||||||||| |||||||||| | ||||||||    
T  33029551 tttttgccacatgtctttcatccaataccctaaatgaactaaatgga 33029597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 43714245 - 43714199
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||||||||||||| ||||||| || |||||||| ||||||||    
T  43714245 ttttttgccacatgtcttacatccaacccttaaatggactaaatgga 43714199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 35274512 - 35274444
Alignment:
Q  110 tgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaa 178  Q
    ||||||||||||| ||||||||   |||||||| |||||||| | |   ||||||||||||||||||||    
T  35274512 tgccacatgtcttccatccaaagtttaaatggactaaatggaacattacctaaatggagcatacctgaa 35274444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 48346204 - 48346280
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||||||| || ||||||||  ||||||  ||||||| || || |  |||||||||||||||| ||||||    
T  48346204 ttttttgccacatgttttgcatccaaattctaaataaagtaaatagaactcaacctaaatggagcatacccgaactc 48346280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 20296355 - 20296262
Alignment:
Q  88 tcttaaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |||||||    
T  20296355 tcttaaccgttggatacttttttgccatatgtctttcatccaaaccctaaatgaagtaaatggatcttagccaaaatggagcatacttgaactc 20296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 92 - 183
Target Start/End: Complemental strand, 22563299 - 22563208
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaa 183  Q
    |||||||  ||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||    
T  22563299 aaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactcaa 22563208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 4371535 - 4371454
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  4371535 gatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 4371454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 21265651 - 21265570
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  21265651 aaccgttagata-ttttttgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagtctaaatggagcatacc 21265570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 22563422 - 22563511
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||  |||| |||||||||||||||| ||||||    
T  22563422 aaccgttagatatttttttgccacatgtcttgcatccaaatcctaaatggagtaaatggagtttagcctaaatggagcatacccgaactc 22563511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 12232651 - 12232572
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcata 172  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||    
T  12232651 aaccgttagata-ttttttgccacatgtcttacatccaaaccctaaatagagtaaatggagcttagcctaaatggagcata 12232572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 20296628 - 20296710
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||||||||||| |||||||||||||||||| |||||||  | ||||||||||||||||| ||||| |||||| |||||||||    
T  20296628 aaccgttggatatttttttgccacatgtcttacatccaattcttaaatggagtaaatggagcttagcctaaatagagcatacc 20296710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Original strand, 21265782 - 21265864
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||  ||||| ||||||||  |||||||    
T  21265782 gatacttttttgccacatgtcttgcatccaaaccctaaatagagtaaatggagcttagcttaaatagagcatactcgaactca 21265864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 17200151 - 17200078
Alignment:
Q  108 tttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||| | |||||||||||||||| ||||||    
T  17200151 tttgccacatgtcttacatccaaatcctaaatggagtaaatggagctttgcctaaatggagcatacccgaactc 17200078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 106 - 182
Target Start/End: Original strand, 29893023 - 29893099
Alignment:
Q  106 tttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    |||||| |||||||||| |||||||||||||||| |||||||| || ||||| |||||||||||||||| |||||||    
T  29893023 tttttgtcacatgtcttgcatccaaaccctaaatagagtaaatagagcttagcctaaatggagcatacccgaactca 29893099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 17200293 - 17200364
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatgga 167  Q
    |||| |||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||    
T  17200293 cgttagatatttttttgccacatgtcttacatccaaaccttaaatggagtaaatggagcttag-ctaaatgga 17200364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 34645623 - 34645547
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||||||||||| |||||| |||||||||||||||||| || ||||  |||||| ||||||||| ||||||    
T  34645623 ttttttgccacatgtcttgcatccataccctaaatggagtaaatagaacttaacctaaatagagcatacccgaactc 34645547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 34645758 - 34645847
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||| ||| |||||||||||||| ||||||||||||||||||| ||||||||  | || |||||||||  ||||| ||||||    
T  34645758 aaccgttagatattttcttgccacatgtcttacatccaaaccctaaatggaataaatggagttaagcctaaatggaatatacccgaactc 34645847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 17737530 - 17737602
Alignment:
Q  107 ttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaac 179  Q
    |||||| ||||||||||||| |||| |||||||||| |||||||| | |   |||||||||||||||||||||    
T  17737530 ttttgctacatgtctttcattcaaaacctaaatggattaaatggagcattacctaaatggagcatacctgaac 17737602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Original strand, 4371548 - 4371586
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  4371548 ttttttgccacatgtcttgcatccaaaccctaaatggag 4371586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 33491396 - 33491358
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  33491396 ttttttgccacatgtcttgcatccaaaccctaaatggag 33491358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 157
Target Start/End: Complemental strand, 157036 - 156972
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttag 157  Q
    ||||||| |||| |||| ||||| ||||||| |||||||| ||||||||||||||||||| |||||    
T  157036 aaccgttagatatttttctgcca-atgtcttacatccaaatcctaaatggagtaaatggagcttag 156972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 8237925 - 8237882
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    ||||||||||||||||||||||| ||||| || |||||||||||    
T  8237925 gatacttttttgccacatgtcttgcatcctaatcctaaatggag 8237882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 4682867 - 4682913
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||||||||| |||| ||||||| ||||||||| ||||||||||    
T  4682867 ttttttgccacatatcttgcatccaagccctaaatgaagtaaatgga 4682913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 21612682 - 21612632
Alignment:
Q  134 ctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaat 184  Q
    |||||||||||||||||| | | | ||||||||||||||| ||||||||||    
T  21612682 ctaaatggagtaaatggagcattggctaaatggagcatacttgaactcaat 21612632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 32222103 - 32222057
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||||||||||||| |||| ||| |||||||||| ||||||||    
T  32222103 ttttttgccacatgtcttgcatctaaatcctaaatggattaaatgga 32222057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 180
Target Start/End: Complemental strand, 4682825 - 4682757
Alignment:
Q  112 ccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaact 180  Q
    ||||||||||| |||| |||| |||||||||||||||| | ||||   |||||||| |||||| |||||    
T  4682825 ccacatgtcttgcatctaaactctaaatggagtaaatgaagcttaaattaaatggaacatacccgaact 4682757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 12232782 - 12232826
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagt 144  Q
    |||| |||||||||||||||||| |||| ||| ||||||||||||    
T  12232782 gatatttttttgccacatgtcttgcatctaaatcctaaatggagt 12232826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 33491417 - 33491457
Alignment:
Q  129 aaaccctaaatggagtaaatggatcttagtctaaatggagc 169  Q
    ||||||||||| ||||||||||| ||||| |||||||||||    
T  33491417 aaaccctaaatagagtaaatggagcttagcctaaatggagc 33491457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 95 - 181
Target Start/End: Complemental strand, 6911115 - 6911029
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  6911115 cgttagatatttttttgccacatgtcttacatccaaaccctaaatggagtaaatggagcttagcctaaatggagcatacctgaactc 6911029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 88 - 182
Target Start/End: Original strand, 15009066 - 15009160
Alignment:
Q  88 tcttaaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    ||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||| |||||||||||||||| |||||||    
T  15009066 tcttaactgttagatacttttttgccacatgtcttacatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcatacccgaactca 15009160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 100 - 181
Target Start/End: Complemental strand, 14999252 - 14999171
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| | ||||||    
T  14999252 gatactttattgccacatgtcttgcatccaaaccctaaatggagtaaattgagcttagcctaaatggagcatatccgaactc 14999171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 6911241 - 6911300
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  6911241 aaccgttggatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatgga 6911300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 183
Target Start/End: Original strand, 43801691 - 43801774
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaa 183  Q
    |||| ||||||||||||| |||| ||||||||| |||||||||||||||||| ||||| ||||||||| |||||| ||||||||    
T  43801691 gatatttttttgccacatatcttgcatccaaactctaaatggagtaaatggagcttagcctaaatggaacatacccgaactcaa 43801774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 16324933 - 16324843
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    ||||||| |||| ||||||| |||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||||| || |||||||    
T  16324933 aaccgttagatatttttttgtcacatgtcttgcatccaaaccctaaatggattaaattgagcttagcctaaatggagcatgcccgaactca 16324843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 8489459 - 8489380
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||| |||| |||||||||||||||||| ||||||||||||||||||| |||||| | ||||  ||||||||||||||||    
T  8489459 cgttagatatttttttgccacatgtcttacatccaaaccctaaatggaataaatgaagcttaacctaaatggagcatacc 8489380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 43801546 - 43801469
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    |||||||||||||||||| ||||||||| |||||||||||||||| |  |||| ||||||| |||||||| |||||||    
T  43801546 ttttttgccacatgtcttacatccaaactctaaatggagtaaatgaagtttagcctaaatgaagcatacccgaactca 43801469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 41403988 - 41404054
Alignment:
Q  108 tttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||| |||||||||| |||||||||||||||| |||||||| || ||||  ||||||||||||||||    
T  41403988 tttgtcacatgtcttgcatccaaaccctaaatagagtaaattgaacttaacctaaatggagcatacc 41404054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 181
Target Start/End: Original strand, 41722035 - 41722128
Alignment:
Q  88 tcttaaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||| |||| |||||||| ||||||||| ||||||| | ||||||  ||||||| || ||||| ||||||| | |||||| ||||||    
T  41722035 tcttaaccgttagatatttttttgcaacatgtcttgcatccaagctctaaataaagtaaatagagcttagcctaaatgaaacatacccgaactc 41722128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 41403840 - 41403760
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaact 180  Q
    |||| ||||||| ||||| |||| |||| ||| |||||||||||||||| || |||| |||||||| |||||||| |||||    
T  41403840 gatatttttttgtcacatatcttacatcaaaatcctaaatggagtaaattgagcttaatctaaatgaagcatacccgaact 41403760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 16325056 - 16325117
Alignment:
Q  92 aaccgttggatacttttttgcca--catgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||| |||| |||||| |||  |||||||| ||||||||||||||||||||||||||||    
T  16325056 aaccgttagatatttttttaccatacatgtcttgcatccaaaccctaaatggagtaaatgga 16325117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 22781130 - 22781087
Alignment:
Q  106 tttttgccacatgtctttcatccaaaccctaaatggagtaaatg 149  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||    
T  22781130 tttttgccacatgccttgcatccaaaccctgaatggagtaaatg 22781087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 22781277 - 22781323
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||| ||||| |||| |||||||||||||||| |||||||||||    
T  22781277 ttttttgtcacatatcttgcatccaaaccctaaattgagtaaatgga 22781323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 40621739 - 40621797
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgg 150  Q
    ||||||| |||| |||||| |||||||| || ||| ||||||||||||| |||||||||    
T  40621739 aaccgttagatatttttttaccacatgttttacattcaaaccctaaatgaagtaaatgg 40621797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 41721904 - 41721827
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    ||||||||||||||||    ||||||| | |||||| |||||||||| |||| ||||||| ||||||| | |||||||    
T  41721904 ttttttgccacatgtcaaaaatccaaatcttaaatgaagtaaatggagcttaatctaaatcgagcatatccgaactca 41721827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 27926289 - 27926365
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||| |||||||  ||||||   | |||||||| |||||||| | | | |||||||||||||||||||||||    
T  27926289 ttttttgccgcatgtctcacatccatgacgtaaatggactaaatggagccttgcctaaatggagcatacctgaactc 27926365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 31194054 - 31193964
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  31194054 aaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactca 31193964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 31194177 - 31194266
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||    
T  31194177 aaccgttggatatttttttgccacatgtcttgcatccaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactc 31194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 17370156 - 17370066
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||  ||||  ||||||||||||||| |||||||    
T  17370156 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcataaatggagcatacccgaactca 17370066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 8754747 - 8754658
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||  |||||||||||||||||| |||||||||||||||| |||||||||||  ||||||||||||||| ||||| ||||||    
T  8754747 aaccgttagatctttttttgccacatgtcttccatccaaaccctaaatagagtaaatggagtttagtctaaatggaggatacccgaactc 8754658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 14076881 - 14076970
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||  ||| |||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||||||| | ||||||    
T  14076881 aaccgttaaatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagaacttagcctaaatggagcatatccgaactc 14076970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 32347117 - 32347198
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||| ||||||| |||||||||| |||||||||| |||||||||||| |||| ||||| |||||||||||||| ||||||||    
T  32347117 gatatttttttgtcacatgtcttacatccaaaccttaaatggagtaattggagcttagcctaaatggagcatatctgaactc 32347198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 185
Target Start/End: Original strand, 36955506 - 36955599
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaatg 185  Q
    ||||||| |||| |||||||||||||||||| || ||||||||||||| |||||||| || ||||| ||||||||||| ||||  |||||||||    
T  36955506 aaccgttagatatttttttgccacatgtcttgcaaccaaaccctaaatagagtaaatagagcttagcctaaatggagcgtacccaaactcaatg 36955599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 36955379 - 36955303
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||||||||| |||||||||||||||||||||||||| | ||||| ||||||||||| |||| ||||||    
T  36955379 ttttttgtcacatgtcttgcatccaaaccctaaatggagtaaatgaagcttagcctaaatggagcctacccgaactc 36955303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 9862217 - 9862295
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaa 183  Q
    ||||||||||||| |||| |||||||||||||||||||||||| | | ||||  ||||||||||||||||  |||||||    
T  9862217 ttttttgccacatatcttgcatccaaaccctaaatggagtaaacgaaacttaccctaaatggagcatacccaaactcaa 9862295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 42546561 - 42546620
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||| |||  ||||||| |||||||||| ||||||||||||||||||||||||||||    
T  42546561 aaccgttagatgtttttttgtcacatgtcttgcatccaaaccctaaatggagtaaatgga 42546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 42546438 - 42546385
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagta 145  Q
    ||||||| |||| |||||||||| ||||||| ||||||||||||||||||||||    
T  42546438 aaccgttagatatttttttgccaaatgtcttgcatccaaaccctaaatggagta 42546385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 39634880 - 39634829
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttag 157  Q
    |||||||||||||||||| |||||||||||| |||| |||||||||| |||||    
T  39634880 ttttttgccacatgtcttacatccaaaccct-aatgaagtaaatggagcttag 39634829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 179
Target Start/End: Complemental strand, 43449541 - 43449469
Alignment:
Q  107 ttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaac 179  Q
    |||||||||||||||| |||||||| ||||||| || ||||| || |||    ||||||||||||||||||||    
T  43449541 ttttgccacatgtcttgcatccaaagcctaaatagactaaattgagctttaggtaaatggagcatacctgaac 43449469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 151
Target Start/End: Complemental strand, 2665713 - 2665667
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||||||||||||| |||| | |||||||||||| ||||||||    
T  2665713 ttttttgccacatgtcttccatcaagaccctaaatggactaaatgga 2665667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 39635015 - 39635096
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||||||  ||| ||||||||| ||| |||| |||||||||||||||| ||||| ||| | ||||| |||||| |||||||||    
T  39635015 aaccgttacatatttttttgccgcatatcttacatccaaaccctaaat-gagtatatgaagcttagcctaaatagagcatacc 39635096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 43450145 - 43450220
Alignment:
Q  107 ttttgccacatgtctttcatccaaaccctaaatggagtaaatggatc-ttagtctaaatggagcatacctgaactca 182  Q
    |||||||||||||| | ||||||||   |||||||| |||||||| | ||||  |||||||||||||||||||||||    
T  43450145 ttttgccacatgtcctccatccaaaatataaatggactaaatggagcattagg-taaatggagcatacctgaactca 43450220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 35207267 - 35207178
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||  ||||| ||||||    
T  35207267 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagcttagcctaaatggaatatacccgaactc 35207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 19318360 - 19318451
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaa 183  Q
    ||||||| |||| |||||||||||||||||| |||| ||||| ||||||||||||||| | ||||| |||||||||||||||| ||||||||    
T  19318360 aaccgttagatatttttttgccacatgtcttgcatctaaaccttaaatggagtaaatgaagcttagcctaaatggagcatacccgaactcaa 19318451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 35207400 - 35207476
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||  |||| |||||||||||||| | ||||||    
T  35207400 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatggagtttagcctaaatggagcatatccgaactc 35207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 25048249 - 25048325
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||||||||| |||||||| |||||||| |||||||||| ||||| |||||||||||||||| ||||||    
T  25048249 ttttttgtcacatgtcttgcatccaaatcctaaatgaagtaaatggagcttagcctaaatggagcatacccgaactc 25048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 39983870 - 39983938
Alignment:
Q  113 cacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||| |||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||    
T  39983870 cacatgtcttgcatccaaaccctaaatggagtaaatggagcttcgcctaaatggagcatacatgaactc 39983938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 19318452 - 19318521
Alignment:
Q  113 cacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    |||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||||||||| |||||||    
T  19318452 cacatgtcttgcatctaaaccttaaatggagtaaatggagcttagcctaaatggagcatacccgaactca 19318521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 182
Target Start/End: Complemental strand, 35363394 - 35363317
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    ||||||||||||||| || |||| |||| |||||||||||||||| | ||||| |||||||||||||||| |||||||    
T  35363394 ttttttgccacatgtgttgcatctaaactctaaatggagtaaatgaaacttagcctaaatggagcatacccgaactca 35363317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 2834426 - 2834493
Alignment:
Q  107 ttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    ||||||||||||| ||  |||||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  2834426 ttttgccacatgttttgtatccaaaccctaaatggaataaatggaacttagcctaaatggagcatacc 2834493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 19318233 - 19318154
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||| |||| ||||||| |||||||||| ||||||||| |||||||||||||||||  ||||  ||||||||||||||||    
T  19318233 cgttagatatttttttgtcacatgtcttacatccaaactctaaatggagtaaatggcgcttaacctaaatggagcatacc 19318154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 6408466 - 6408521
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaa 147  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||| ||||||    
T  6408466 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatgaagtaaa 6408521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 6408329 - 6408261
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatac 173  Q
    ||||||||||||| |||  ||| |||| |||||||| |||||||||| ||||| |||||||||||||||    
T  6408329 ttttttgccacatatctgccattcaaatcctaaatgaagtaaatggagcttagactaaatggagcatac 6408261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 34589411 - 34589335
Alignment:
Q  107 ttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaa 183  Q
    ||||||||||||||||  ||||| |||||||||||| |||||||| | | |  ||||||||||||||||| ||||||    
T  34589411 ttttgccacatgtcttaaatccataccctaaatggactaaatggagcattgagtaaatggagcatacctggactcaa 34589335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 26903517 - 26903429
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaat 184  Q
    ||||||| |||||||||||||||||||| |   |  ||||||||||||| |||||||| | ||||| |||||| ||||||||| |||||||||    
T  26903517 aaccgttcgatacttttttgccacatgttt---aaacaaaccctaaatgaagtaaatgaagcttagcctaaat-gagcatacccgaactcaat 26903429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 39983817 - 39983779
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  39983817 ttttttgccacatgtcttgcatccaaaccctaaatggag 39983779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 45560626 - 45560699
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaa 178  Q
    |||||||||||||||||  ||||||   |||||||||| |||||||| | | | ||||||||||||||||||||    
T  45560626 ttttttgccacatgtctcgcatccatgacctaaatggactaaatggaacattgcctaaatggagcatacctgaa 45560699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 48006336 - 48006395
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||  ||| ||||||||||||||| || |||||||| ||||||| |||||||||||    
T  48006336 aaccgttaaatatttttttgccacatgttttgcatccaaatcctaaatagagtaaatgga 48006395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 29474625 - 29474702
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagca 170  Q
    ||||||| |||| |||||| | ||||||||| ||||||| | |||||| |||||||||||  |||| ||||||||||||    
T  29474625 aaccgttagatattttttt-ctacatgtcttgcatccaagctctaaatagagtaaatggagtttagcctaaatggagca 29474702  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 48737933 - 48738011
Alignment:
Q  111 gccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaatggaga 189  Q
    |||||||||||| |||| | |||| ||||||| |||||||| | |   ||||||||||||||||| ||||||| |||||    
T  48737933 gccacatgtcttgcatctagaccccaaatggactaaatggagcattacctaaatggagcatacctaaactcaaaggaga 48738011  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 17914960 - 17915049
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||||| |||||||||||||||||| |||||||||  ||||||||||||||||| ||||| |||||||||||||| | ||||||    
T  17914960 aaccgttggatatttttttgccacatgtcttgcatccaaactttaaatggagtaaatggaacttagcctaaatggagcatatccgaactc 17915049  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 9551445 - 9551526
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||| |||||||||| ||||||| ||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  9551445 gatatttttttgccaaatgtcttccatccaagccctaaatggagtaaatggagtttagtctaaatggagcatacccgaactc 9551526  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 54316054 - 54316123
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||||||||||||||||| ||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  54316054 ttttttgccacatgtcttgcatccaaaccctaaatggagtaaatagagcttagcctaaatggagcatacc 54316123  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 5465942 - 5465855
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaac 179  Q
    ||||||| |||| |||||||||||||||||| |||| |||||||||||| |||||||| | ||||| |||||||||||||||| ||||    
T  5465942 aaccgttagatatttttttgccacatgtcttacatctaaaccctaaatgaagtaaatgaaacttagcctaaatggagcatacccgaac 5465855  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 7062061 - 7061972
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||  ||| |||||||||||||||||| |||||||||| |||||||||||||| ||  |||| |||||||||||||||| ||||||    
T  7062061 aaccgttatatatttttttgccacatgtcttgcatccaaaccataaatggagtaaatagaggttagcctaaatggagcatacccgaactc 7061972  T

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Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 11789948 - 11789859
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||| ||| ||||||||||||| |||| |||| ||||||||||||||||||||| | ||| | |||||||||||||||| ||||||    
T  11789948 aaccgttgaatatttttttgccacatatcttgcatctaaaccctaaatggagtaaatgaagctttgcctaaatggagcatacccgaactc 11789859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 50544331 - 50544256
Alignment:
Q  106 tttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||||||||||||| |||||||||||||||| || |||||||| ||||| |||||||||||||| | ||||||    
T  50544331 tttttgccacatgtcttgcatccaaaccctaaatagaataaatggagcttagcctaaatggagcatatccgaactc 50544256  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 181
Target Start/End: Original strand, 8538352 - 8538428
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||||| || |  |||||||||||||||||| ||||    
T  8538352 ttttttgacacatgtcttgcatccaaaccctaaatggactaaatggagctaatactaaatggagcatacctggactc 8538428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 92 - 174
Target Start/End: Complemental strand, 46993156 - 46993074
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    ||||||| |||| |||||||| |||| |||| |||||||||||||||| || |||||||| ||||  ||||||||||||||||    
T  46993156 aaccgttagatatttttttgctacatatcttgcatccaaaccctaaatagaataaatggagcttaacctaaatggagcatacc 46993074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 35256199 - 35256138
Alignment:
Q  124 catccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactcaatg 185  Q
    ||||||||| |||||||||||||||| | |||||||||||| ||||||||| ||||||||||    
T  35256199 catccaaactctaaatggagtaaatgcagcttagtctaaatagagcatacccgaactcaatg 35256138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 42475962 - 42475889
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggag 168  Q
    |||| |||| ||||||||||| |||||| |||||||||||||||| ||||||||| | ||||| ||||||||||    
T  42475962 cgttagatatttttttgccacgtgtcttgcatccaaaccctaaatagagtaaatgaagcttagcctaaatggag 42475889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 23655294 - 23655362
Alignment:
Q  106 tttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    ||||||||||||||||| |||| |||||||||||||| |||||| | ||||  ||||||||||||||||    
T  23655294 tttttgccacatgtcttgcatctaaaccctaaatggaataaatgaagcttaacctaaatggagcatacc 23655362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 3556577 - 3556628
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||||||    
T  3556577 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatggag 3556628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 11790074 - 11790133
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||| |||| |||||||||||||||||| ||||||||||||||||| | ||||||||    
T  11790074 aaccgttagatatttttttgccacatgtcttgcatccaaaccctaaatgaaataaatgga 11790133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 96 - 142
Target Start/End: Complemental strand, 17914798 - 17914752
Alignment:
Q  96 gttggatacttttttgccacatgtctttcatccaaaccctaaatgga 142  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||    
T  17914798 gttggatatttttttgccacatgtcttgcatccaaaccctaaatgga 17914752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 21785923 - 21785984
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatgg 166  Q
    |||||||||||||||  | ||||||||| |||||||||||||||||| ||||| ||||||||    
T  21785923 ttttttgccacatgtaatgcatccaaactctaaatggagtaaatggagcttagcctaaatgg 21785984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 92 - 148
Target Start/End: Original strand, 5466061 - 5466117
Alignment:
Q  92 aaccgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaat 148  Q
    ||||||| |||| |||| ||||||||||||| |||||||||||||||| ||||||||    
T  5466061 aaccgttagatatttttgtgccacatgtcttacatccaaaccctaaatagagtaaat 5466117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 19037945 - 19037989
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatg 149  Q
    |||||||||||||||||| |||||||| |||||||||||||||||    
T  19037945 ttttttgccacatgtcttgcatccaaatcctaaatggagtaaatg 19037989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 50551478 - 50551546
Alignment:
Q  106 tttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||||||||||| |||| |||||||||| ||||||||||||||  |  |||| ||||||||||||||||    
T  50551478 tttttgccacatatcttacatccaaaccttaaatggagtaaataaagtttagcctaaatggagcatacc 50551546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 3556447 - 3556376
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcat 171  Q
    |||| |||||||| ||||||||| |||||||||| ||||||||||||||| |  ||||  ||||||||||||    
T  3556447 gatatttttttgcaacatgtcttgcatccaaaccttaaatggagtaaatgaagtttagcttaaatggagcat 3556376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 182
Target Start/End: Original strand, 24673936 - 24674023
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactca 182  Q
    |||| |||| ||||||| || ||||||| ||||||||| |||||| ||||||||| |  |||| |||||||||||||| | |||||||    
T  24673936 cgttagatatttttttgtcatatgtcttacatccaaactctaaatagagtaaatgaagtttagcctaaatggagcatatccgaactca 24674023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 143
Target Start/End: Complemental strand, 26297390 - 26297352
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggag 143  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  26297390 ttttttgccacatgtcttgcatccaaaccctaaatggag 26297352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 32591242 - 32591168
Alignment:
Q  100 gatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||| ||||||||||||| | || ||| |||||| ||||||||||||||||| ||||  |||||| |||||||||    
T  32591242 gatatttttttgccacatattttgcatacaaaccttaaatggagtaaatggagcttaacctaaatagagcatacc 32591168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 151
Target Start/End: Original strand, 1856705 - 1856752
Alignment:
Q  104 cttttttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    ||||||||||||||||| |||||||||  ||||||||| |||||||||    
T  1856705 cttttttgccacatgtcattcatccaagacctaaatggtgtaaatgga 1856752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 151
Target Start/End: Original strand, 19075748 - 19075791
Alignment:
Q  108 tttgccacatgtctttcatccaaaccctaaatggagtaaatgga 151  Q
    |||||||||||||||||||||||  |||||||||| ||||||||    
T  19075748 tttgccacatgtctttcatccaattcctaaatggactaaatgga 19075791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 46993284 - 46993363
Alignment:
Q  95 cgttggatacttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacc 174  Q
    |||| |||| |||||||| | || |||| ||| |||| | |||||||||||||| || |||||| |||||||||||||||    
T  46993284 cgttagatatttttttgctaaatatcttgcattcaaatcttaaatggagtaaattgagcttagtttaaatggagcatacc 46993363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 32160383 - 32160342
Alignment:
Q  109 ttgccacatgtctttcatccaaaccctaaatggagtaaatgg 150  Q
    ||||||||||||||||||| ||| |||||||||| |||||||    
T  32160383 ttgccacatgtctttcatctaaagcctaaatggactaaatgg 32160342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 19075067 - 19075031
Alignment:
Q  108 tttgccacatgtctttcatccaaa-ccctaaatggag 143  Q
    |||||||||||||||||||||||| ||||||||||||    
T  19075067 tttgccacatgtctttcatccaaacccctaaatggag 19075031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 32591374 - 32591442
Alignment:
Q  105 ttttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatac 173  Q
    |||||| ||||||||||| |||||||| ||||||| ||||||||  | ||||   ||||||||||||||    
T  32591374 ttttttaccacatgtcttacatccaaatcctaaattgagtaaataaaacttaacttaaatggagcatac 32591442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 9303 - 9377
Alignment:
Q  107 ttttgccacatgtctttcatccaaaccctaaatggagtaaatggatcttagtctaaatggagcatacctgaactc 181  Q
    |||||||||||||||| ||||| || | |||||||| |||||||| |  |  |||||||||||||||||||||||    
T  9303 ttttgccacatgtcttccatccgaagcttaaatggattaaatggagcaaaacctaaatggagcatacctgaactc 9377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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