View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_high_32 (Length: 418)

Name: NF17452_high_32
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_high_32
NF17452_high_32
[»] scaffold0472 (1 HSPs)
scaffold0472 (336-418)||(2791-2873)
[»] chr4 (2 HSPs)
chr4 (198-275)||(46227476-46227553)
chr4 (268-308)||(11913853-11913892)
[»] chr7 (2 HSPs)
chr7 (198-258)||(14706610-14706670)
chr7 (268-310)||(2433163-2433204)
[»] chr6 (2 HSPs)
chr6 (268-310)||(12877142-12877184)
chr6 (268-308)||(15953161-15953201)
[»] chr2 (2 HSPs)
chr2 (198-258)||(3506914-3506974)
chr2 (268-308)||(36050416-36050457)
[»] chr1 (2 HSPs)
chr1 (268-306)||(147000-147038)
chr1 (268-308)||(39197507-39197547)
[»] chr5 (1 HSPs)
chr5 (232-273)||(8796058-8796099)


Alignment Details
Target: scaffold0472 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 2873 - 2791
Alignment:
Q  336 gtctcctcgactcaaagcataaccaacatctagatagctaccaagtcgggttccattacactcagataaaaatgtggcattcc 418  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2873 gtctcatcgactcaaagcataaccaacatctagatagctaccaagtcgggttccattacactcaaataaaaatgtggcattcc 2791  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 46227553 - 46227476
Alignment:
Q  198 tattattcctccattgatattgttatgtgcccattattgtcccgtgcgatagcacgggtcggcgtcctagttattatt 275  Q
    |||||||||||||||| || ||  ||||| |||||| |||||||||||||||||||||||| |   ||||||||||||    
T  46227553 tattattcctccattgctaatgaaatgtgtccattactgtcccgtgcgatagcacgggtcgaccgtctagttattatt 46227476  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Complemental strand, 11913892 - 11913853
Alignment:
Q  268 ttattatttatagagataattttatgcctaattttacaaca 308  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  11913892 ttattatttatagagataa-tttatgtctaattttacaaca 11913853  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 14706610 - 14706670
Alignment:
Q  198 tattattcctccattgatattgttatgtgcccattattgtcccgtgcgatagcacgggtcg 258  Q
    |||||||||||||||| || ||  ||||| |||||| ||||||||||||||||||||||||    
T  14706610 tattattcctccattgctaatgaaatgtgtccattactgtcccgtgcgatagcacgggtcg 14706670  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Original strand, 2433163 - 2433204
Alignment:
Q  268 ttattatttatagagataattttatgcctaattttacaacaat 310  Q
    ||||||||| |||||||||||| ||||||||||||||||||||    
T  2433163 ttattatttttagagataattt-atgcctaattttacaacaat 2433204  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 12877184 - 12877142
Alignment:
Q  268 ttattatttatagagataattttatgcctaattttacaacaat 310  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  12877184 ttattatttatagagataatcttatgcctaatcttacaacaat 12877142  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 15953161 - 15953201
Alignment:
Q  268 ttattatttatagagataattttatgcctaattttacaaca 308  Q
    ||||||||||| |||||||| ||||| ||||||||||||||    
T  15953161 ttattatttattgagataatcttatgtctaattttacaaca 15953201  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 3506914 - 3506974
Alignment:
Q  198 tattattcctccattgatattgttatgtgcccattattgtcccgtgcgatagcacgggtcg 258  Q
    ||||||||||||||||  | ||  ||||| |||||| ||||||||||||||||||||||||    
T  3506914 tattattcctccattgcaaatgaaatgtgtccattactgtcccgtgcgatagcacgggtcg 3506974  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 36050416 - 36050457
Alignment:
Q  268 ttattatttatagagataattttatgcct-aattttacaaca 308  Q
    ||||||||||||||||||||| ||||||| ||||||||||||    
T  36050416 ttattatttatagagataattgtatgcctaaattttacaaca 36050457  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 306
Target Start/End: Complemental strand, 147038 - 147000
Alignment:
Q  268 ttattatttatagagataattttatgcctaattttacaa 306  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  147038 ttattatttatagagataatcttatgcttaattttacaa 147000  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 39197507 - 39197547
Alignment:
Q  268 ttattatttatagagataattttatgcctaattttacaaca 308  Q
    |||||||||| ||| ||||||||||||||||| ||||||||    
T  39197507 ttattatttacagaaataattttatgcctaatattacaaca 39197547  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 8796058 - 8796099
Alignment:
Q  232 tattgtcccgtgcgatagcacgggtcggcgtcctagttatta 273  Q
    ||||| ||||||||||||||||||||||||  ||||||||||    
T  8796058 tattgacccgtgcgatagcacgggtcggcgatctagttatta 8796099  T

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