View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_36 (Length: 403)
Name: NF17452_high_36
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_36 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 68 - 342
Target Start/End: Complemental strand, 36946011 - 36945738
Alignment:
| Q |
68 |
tcttcaatccattttgaccctcaaatattgtgatcaactannnnnnncatttataatttgattgtttaccaacaaagtttcccaaaattcatattagtgt |
167 |
Q |
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| T |
36946011 |
tcttcaatccattttgaccctcaaatattgtgatcaactatttttttcatttataatttgattgtttaccaacaaagtttcccaaaattcatattagtgt |
36945912 |
T |
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| Q |
168 |
catcatttgtacatttgtcatcctttagttcgacttttctttaaaattacaaatatataaccaactgaaaatgacatttcttttaaaacaaggaagacga |
267 |
Q |
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| T |
36945911 |
catcatttgtacatttgtcatcctttagttcgacttttctttaaaattacaaatatagaaccaactgaaaatgacatttcttttaaaac-aggaagaaga |
36945813 |
T |
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| Q |
268 |
cattacatacacaagttactaattttgtactatagctatgggatcaaattatgcttgagagaaatgcagcaacac |
342 |
Q |
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| T |
36945812 |
catcacatacacaagttactaattttgtactatagctatgggatcaaattatgtttgagagaaatgcagcaacac |
36945738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 325
Target Start/End: Complemental strand, 36963180 - 36962975
Alignment:
| Q |
118 |
ttataatttgattgtttaccaacaaagtttcccaaaattcatatt--agtgtcatcatttgt--acatttgtcatcctttagttcgacttttctttaaaa |
213 |
Q |
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| T |
36963180 |
ttataatttgattgtctatctacaaagttccccaaaattcatattaaagtgttatcgtttgttgacgtttgccatcctttagttagatttttctttaaaa |
36963081 |
T |
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| Q |
214 |
ttacaaatatataaccaactgaaaatgacatttcttttaaaacaaggaagacgacattacatacacaagttactaattttgtactatagctatgggatca |
313 |
Q |
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| T |
36963080 |
ttaaaaatataga---atctgaaagtgacatttctttaaaaacaaagatgataaaatcacatacatatgttacacattttgtac--tagctatgggatc- |
36962987 |
T |
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| Q |
314 |
aattatgcttga |
325 |
Q |
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| T |
36962986 |
aattatgcttga |
36962975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 36945718 - 36945680
Alignment:
| Q |
343 |
ttgattggttaatattcacatgaaacacaccaaatttat |
381 |
Q |
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| T |
36945718 |
ttgattggttaatattcacatgaaatccaccaaatttat |
36945680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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