View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_high_38 (Length: 395)

Name: NF17452_high_38
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_high_38
NF17452_high_38
[»] chr4 (10 HSPs)
chr4 (126-378)||(39080109-39080362)
chr4 (121-224)||(39070788-39070891)
chr4 (126-224)||(39091237-39091335)
chr4 (12-69)||(39080369-39080426)
chr4 (152-209)||(39087861-39087918)
chr4 (11-121)||(39071252-39071365)
chr4 (152-223)||(39082193-39082264)
chr4 (279-311)||(3267901-3267933)
chr4 (152-192)||(39075094-39075134)
chr4 (143-191)||(39097556-39097604)
[»] chr6 (1 HSPs)
chr6 (277-321)||(22714088-22714132)
[»] chr7 (1 HSPs)
chr7 (240-272)||(21235493-21235525)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 126 - 378
Target Start/End: Complemental strand, 39080362 - 39080109
Alignment:
Q  126 tgaagaaagtggtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaatgc 225  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39080362 tgaagaaggtagtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaatgc 39080263  T
Q  226 ttccaagcacccaaccttggaggtcacccctcacttacataaacactactggtgtttattctttccaacttccactcaaatccaaccggtgttccaacat 325  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39080262 ttccaagcacacacccttggaggtcacccctcacttacataaacactactagtgtttattctttccaacttccactcaaatccaaccggtgttccaacat 39080163  T
Q  326 ttgacacataaccaagcaaaggatttttgtc-ttgcgattttgaggtttcttgg 378  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39080162 ttgacacataaccaagcaaaggatttttgtctttgcgattttgaggtttcttgg 39080109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 39070891 - 39070788
Alignment:
Q  121 ggtgctgaagaaagtggtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagt 220  Q
    |||||||||||| || ||||| |||||||  |||||||||||||||| |||||||||||||||| |||||||  ||||||| ||||||||  ||||||||    
T  39070891 ggtgctgaagaaggtagtatagatgttgaaatttgtctttcttatgagattttggaggctttggcaaatgatgttgagttcttggttccaatttctaagt 39070792  T
Q  221 aatg 224  Q
    ||||    
T  39070791 aatg 39070788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 39091335 - 39091237
Alignment:
Q  126 tgaagaaagtggtataaatgttgagctttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaatg 224  Q
    ||||||| || | ||| |||||||  |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||  |||||||||||||    
T  39091335 tgaagaaggtagcatagatgttgaagtttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcttggttcctagttctaagtaatg 39091237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 39080426 - 39080369
Alignment:
Q  12 agagaaaactaaaataacttcatttcaagtgctattatctcacatttggcgttccgtt 69  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  39080426 agagaaaactaaaataacttcatttcaagcgctattatctcacatttggcgttccgtt 39080369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 152 - 209
Target Start/End: Complemental strand, 39087918 - 39087861
Alignment:
Q  152 tttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttcc 209  Q
    |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  39087918 tttgtctttcttatgagattttggaggctttgggaaatgatgctgagttcatggttcc 39087861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 39071365 - 39071252
Alignment:
Q  11 cagagaaaactaaaataacttcatttcaagtgctattatctcacatttggcgttccgtt---cgttgcagaaaactttatccacaagaagatgtttcttc 107  Q
    |||| |||||||||||| ||||  ||||||  |||||||||||  ||||||||||||||   ||||||| ||||||| |||||| |||||||||||  |     
T  39071365 cagataaaactaaaatatcttcgcttcaagcactattatctcatgtttggcgttccgttgttcgttgcaaaaaacttgatccacgagaagatgttttcta 39071266  T
Q  108 tgtgttgtttatag 121  Q
    ||||||| ||||||    
T  39071265 tgtgttgattatag 39071252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 39082264 - 39082193
Alignment:
Q  152 tttgtctttcttatgaaattttggaggctttgggaaatgatactgagttcatggttccatgttctaagtaat 223  Q
    ||||||||||||  || || ||||||||||||||||||||| | |||||| |||||||  ||||||||||||    
T  39082264 tttgtctttctttcgagatattggaggctttgggaaatgatgccgagttcttggttcctagttctaagtaat 39082193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 3267901 - 3267933
Alignment:
Q  279 gtttattctttccaacttccactcaaatccaac 311  Q
    |||||||||||||||||||||||||||| ||||    
T  3267901 gtttattctttccaacttccactcaaattcaac 3267933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 39075134 - 39075094
Alignment:
Q  152 tttgtctttcttatgaaattttggaggctttgggaaatgat 192  Q
    |||||||| ||||||| |||||||||||| |||||||||||    
T  39075134 tttgtcttccttatgatattttggaggctatgggaaatgat 39075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 39097604 - 39097556
Alignment:
Q  143 atgttgagctttgtctttcttatgaaattttggaggctttgggaaatga 191  Q
    |||||||  |||| ||||||||||| |||||||||||| ||||||||||    
T  39097604 atgttgaagtttgcctttcttatgatattttggaggctatgggaaatga 39097556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 277 - 321
Target Start/End: Original strand, 22714088 - 22714132
Alignment:
Q  277 gtgtttattctttccaacttccactcaaatccaaccggtgttcca 321  Q
    |||||||||||||||||||||||||||||||||||  ||||||||    
T  22714088 gtgtttattctttccaacttccactcaaatccaactagtgttcca 22714132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 21235525 - 21235493
Alignment:
Q  240 ccttggaggtcacccctcacttacataaacact 272  Q
    ||||||||||||||||||||||| |||||||||    
T  21235525 ccttggaggtcacccctcacttatataaacact 21235493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University