View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_39 (Length: 375)
Name: NF17452_high_39
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 29554619 - 29554276
Alignment:
| Q |
14 |
gtttcatatagtttagcattacgaaaagatataaaagaatataaataaaacataatagactctaaactaacatctgacaggcctttgagcagaagacatg |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554619 |
gtttcatatagtttagcattacgaaaagatataaaagaatataaataaaacataatagactctaaactaacatctgacaggcctttgagcagaagacatt |
29554520 |
T |
|
| Q |
114 |
tgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcatttctcacaagaccactcatcgca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554519 |
tgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcatttctcacaagaccactcatcgca |
29554420 |
T |
|
| Q |
214 |
catggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagttaacacggtagctcgattcgtccccttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554419 |
catggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagttaacacggtagctcgattcgtccccttt |
29554320 |
T |
|
| Q |
314 |
cctcttccgcttcttcccttactgctccctgcttcattactatc |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29554319 |
cctcttccgcttcttcccttactgctccctgcttcattactatc |
29554276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 29539731 - 29539494
Alignment:
| Q |
93 |
ggcctttgagcagaagacatgtgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcattt |
192 |
Q |
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| T |
29539731 |
ggcctttgagtagaaggcatgtgtttctagtgggtcattgacgctgttgattgcacaccgcgcatgctgtggcagatccgatgtttgcataggtacattg |
29539632 |
T |
|
| Q |
193 |
ctcacaagaccactcatcgcacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagtta----- |
287 |
Q |
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| |||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
29539631 |
cccacaagaccactcactgcacatggcgcaagcagtggcagatccgacgtttgcataggtacattcaacacaataccactcattatcaacggttattttg |
29539532 |
T |
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| Q |
288 |
----acacggtagctcgattcgtcccctttcctcttcc |
321 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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| T |
29539531 |
ctggacacggtagctcgatttgtcccctttcctcttcc |
29539494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 29556851 - 29556787
Alignment:
| Q |
22 |
tagtttagcattacgaaaagatataaaagaatataaataaaacataatagactctaaactaacat |
86 |
Q |
| |
|
||||||| |||||| ||| | |||||||||||||||||||||| | || || ||||||| ||||| |
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| T |
29556851 |
tagtttaacattacaaaagggtataaaagaatataaataaaaccttatggattctaaacaaacat |
29556787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 345
Target Start/End: Original strand, 42780219 - 42780361
Alignment:
| Q |
212 |
cacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagtta---------acacggtagctcgat |
302 |
Q |
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||||| || ||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||| |||||||||| |
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| T |
42780219 |
cacatcgcacatgcagtggcagatccgacgtttgcataggtacattgctcacaagaccactcattatcattagttattatgctggacactgtagctcgat |
42780318 |
T |
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| Q |
303 |
tcgtcccctttcctcttccgcttcttcccttactgctccctgc |
345 |
Q |
| |
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| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42780319 |
ttgtcccctttcctcttccacttcttcccttactgctccctgc |
42780361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 42780152 - 42780282
Alignment:
| Q |
84 |
catctgacaggcctttgagcagaagacatgtgtttatagtgcgtcactgacgctgttgattgcacatcacg-----cattcagtgacagatccgacgttt |
178 |
Q |
| |
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||||| ||| |||||||| || ||||||| | ||| ||||| |||| |||| ||||||||| |||| ||| ||| ||||| |||||||||||||| |
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| T |
42780152 |
catctaacaagcctttgaacaaaagacatttttttgtagtgggtcattgacactgttgattacacaacacatcgcacatgcagtggcagatccgacgttt |
42780251 |
T |
|
| Q |
179 |
gcatacgtgcatttctcacaagaccactcat |
209 |
Q |
| |
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||||| || |||| ||||||||||||||||| |
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| T |
42780252 |
gcataggtacattgctcacaagaccactcat |
42780282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 209
Target Start/End: Complemental strand, 42194963 - 42194847
Alignment:
| Q |
93 |
ggcctttgagcagaagacatgtgtttatagtgcgtcactgacgctgttgattgcacatcacgcattcagtgacagatccgacgtttgcatacgtgcattt |
192 |
Q |
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|
|||||||||||||||||||||||||||||||| |||| || |||| ||||||||||||| ||||| | ||| ||||||| || |||||||| || |||| |
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| T |
42194963 |
ggcctttgagcagaagacatgtgtttatagtgggtcattgccgctcttgattgcacatcgcgcatgcggtggcagatccaacatttgcataggtacattg |
42194864 |
T |
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| Q |
193 |
ctcacaagaccactcat |
209 |
Q |
| |
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||||||||||||||||| |
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| T |
42194863 |
ctcacaagaccactcat |
42194847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 345
Target Start/End: Complemental strand, 42194911 - 42194771
Alignment:
| Q |
211 |
gcacatggcgcattcagtggcagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagtta---------acacggtagctcga |
301 |
Q |
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|||||| |||||| | ||||||||||| || ||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||| |
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| T |
42194911 |
gcacatcgcgcatgcggtggcagatccaacatttgcataggtacattgctcacaagaccactcattatcatcagttaatctgctggacacggtagct--- |
42194815 |
T |
|
| Q |
302 |
ttcgtcccctttcctcttccgcttcttcccttactgctccctgc |
345 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
42194814 |
ttcgtcccctttcctcttccgctttttcctttactgctccctgc |
42194771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 78
Target Start/End: Complemental strand, 44374699 - 44374663
Alignment:
| Q |
43 |
tataaaagaatata-aataaaacataatagactctaa |
78 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| |
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|
| T |
44374699 |
tataaaagaatatataataaaacataatagactctaa |
44374663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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