View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_44 (Length: 355)
Name: NF17452_high_44
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 5727859 - 5728198
Alignment:
| Q |
1 |
tcaaattcccacaatggctacttcttctcatcccttaacaaatcttactcctacaatgatgatcgatgtaatgtcttaggtatacatttaagtacttaat |
100 |
Q |
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| T |
5727859 |
tcaaattaccacaatggctacttcttctcatcccttaacaaatcttactcctacaatgatgatcgatgtaatgtcttaggtatacatttaagtacttaat |
5727958 |
T |
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| Q |
101 |
tttgttaggaaattgtttaatataggataatagtacaattttactaaagatacaattagattattattccatttttcaaaagatgggttgagtttctatc |
200 |
Q |
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| T |
5727959 |
tttgttaggaaattgtttaatataggataatagtacaattttactaaagatacaattagattattattccatttttcaaaagatgggttgagtttctatc |
5728058 |
T |
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| Q |
201 |
tggtctgtgtaaaaaatcaatgagatgacactgtagcaacatagcaccggaaaaaccccaataaagggccttcaagcaacgaatagttccactatctttg |
300 |
Q |
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| T |
5728059 |
tggtctgtgtaaaaaatcaatgagatgacactgtagcaacatagcaccggaaaaaccccaataaagggccttcaagcaacgaatggttccactatctttg |
5728158 |
T |
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| Q |
301 |
ccttgtccttattattggccatgattccactataataatt |
340 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
5728159 |
ccttgtccttattattggccatgattccactataataatt |
5728198 |
T |
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