View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_47 (Length: 342)
Name: NF17452_high_47
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 330
Target Start/End: Original strand, 41654493 - 41654816
Alignment:
| Q |
17 |
acaccatcttgatgatgcattacaagacaagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactccttaaattttcatcct |
116 |
Q |
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| T |
41654493 |
acaccatcttgatgatgcattacaagacaagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactcgttaaattttcatcct |
41654592 |
T |
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| Q |
117 |
gtaatacac-----tttataatatcaacatt--atttggaaagttgtggattcaatattcttttctagaagatcttatcgat---gtctttgtcttcagg |
206 |
Q |
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| T |
41654593 |
gtaaaatatcaacattaattagttaaattttttatttggaaagttgtggattcaatattcttttctagaagatcttatcgatcatgtctttgtcttcagg |
41654692 |
T |
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| Q |
207 |
tacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggttcattatatgcttttcttatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41654693 |
tacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggttcattatatgcttttcttatc |
41654792 |
T |
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| Q |
307 |
gatgtcttcttttcacctttgctt |
330 |
Q |
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| T |
41654793 |
gatgtcttcttttcacctttgctt |
41654816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 28815982 - 28815873
Alignment:
| Q |
178 |
aagatcttatcgatgtctttgtcttcaggtacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagaga |
277 |
Q |
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| T |
28815982 |
aagatcttattgatttctttgatttcaggtacatcacacttttgcaactgctggatctgacggtgcttttaatttctgggataaggacagtaaacagaga |
28815883 |
T |
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| Q |
278 |
ctcaaggttc |
287 |
Q |
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| T |
28815882 |
ctcaaggttc |
28815873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 28816158 - 28816039
Alignment:
| Q |
24 |
cttgatgatgcattacaagacaagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactccttaaattttcatcctgtaatac |
123 |
Q |
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|||||||||||| |||| ||||||||||||||||| |||||||||||||| ||| || |||||||| ||||||||||||||||| ||||| ||||| | |
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| T |
28816158 |
cttgatgatgcacaacaaagcaagaattttacttttaaatgccacagagaaagtaacgagatatattcggtcaactccttaaatttccatccggtaatgc |
28816059 |
T |
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| Q |
124 |
actttataatatcaacatta |
143 |
Q |
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||| ||||||||||| |||| |
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| T |
28816058 |
actgtataatatcaaaatta |
28816039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 204 - 286
Target Start/End: Complemental strand, 1460565 - 1460483
Alignment:
| Q |
204 |
aggtacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggtt |
286 |
Q |
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| T |
1460565 |
aggtacaccacacatttgctacggctggttctgatggtgcttttaatttttgggacaaggatagtaaacagaggcttaaggtt |
1460483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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