View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_50 (Length: 332)
Name: NF17452_high_50
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_50 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 332
Target Start/End: Complemental strand, 12569310 - 12568997
Alignment:
| Q |
18 |
tcctctgtatgataagcacataagcatgtaaaagtcaatcgcttggacacgacgattcgttgaataacctaaagataagaaagtcgaaatcaagtgtatg |
117 |
Q |
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| T |
12569310 |
tcctctgtatgataagcacatatgcatgtaaaagtcaatcgcttggacacgacaattcattgaataacctaaagataagaaagtcgaaatcaagtgtatg |
12569211 |
T |
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| Q |
118 |
acatgaacaatcctctgattaatccacatagaattcaaagcaatcctcgggatacaacgatcctctaaattgatcaaactggatatcaagtctcaaagct |
217 |
Q |
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| T |
12569210 |
acatgaacaatcctctgattaatccacatagaattcaaagcaatcgtcgggatacaaagatcctctaaattgatcaagttgaatatcaagtctcaaagct |
12569111 |
T |
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| Q |
218 |
ttagttatcttacctgtagaatgatcttctaaagtacaatgatatgattctctaaaaaagctaggcataaaaaagagatcatgttcaaacaaatgcaaac |
317 |
Q |
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| T |
12569110 |
tt-gttatcttaggtgtagaatgatcttctaaagtacaatgatatgattctctaaaaaagctagggataaaaaagagatcatgttcaaacaaatgcaaac |
12569012 |
T |
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| Q |
318 |
aattatatagtacat |
332 |
Q |
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||| || |||||||| |
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| T |
12569011 |
aatcatgtagtacat |
12568997 |
T |
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