View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_51 (Length: 331)
Name: NF17452_high_51
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_51 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 15406 - 15106
Alignment:
| Q |
13 |
aatatgagcaaatcagatatagtataagaagtgtctatcaaaagacaaatgaagatatatcaaataaaatggcatgcaattcacagaaatatttacttac |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15406 |
aatatgggcaaatcagatatagtataagaagtgtctatcaaaagataagtgaagatatatcaaataaaatggcatgcaattcacagaaatatttactcac |
15307 |
T |
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| Q |
113 |
agcaattcaagcaaaaaatacagtgcttaccttgccgatatagtgaacattaattccatgagcagctagtgcttctgttgatgtctggccatccataggt |
212 |
Q |
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| T |
15306 |
agcaattcaagcaaaaaatacagtgcttaccttgccgatatagcgaacattaattccatgagcagctagtgcttctgttgatgtctggccatccataggt |
15207 |
T |
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| Q |
213 |
gaaacttcgagggtgcataggtcttgtacaaacttcggaagtgcaacatcggtaagatattgaccaacttttctcacattttcttcatcagctgctattt |
312 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15206 |
gaaacttctagggtgcataggtcttgtacaaacttcggaagtgcaacatcggtaagatattgaccaacttttctcacattttcttcatcagctgctattt |
15107 |
T |
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| Q |
313 |
c |
313 |
Q |
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| T |
15106 |
c |
15106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 105 - 313
Target Start/End: Complemental strand, 8666227 - 8666019
Alignment:
| Q |
105 |
ttacttacagcaattcaagcaaaaaatacagtgcttaccttgccgatatagtgaacattaattccatgagcagctagtgcttctgttgatgtctggccat |
204 |
Q |
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| T |
8666227 |
ttacttacagcaattaaactaaaaaatacaatgcttaccttgccaatatagcgaacattaattccatgagcatggagtgcttctgttaatgtctggccat |
8666128 |
T |
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| Q |
205 |
ccataggtgaaacttcgagggtgcataggtcttgtacaaacttcggaagtgcaacatcggtaagatattgaccaacttttctcacattttcttcatcagc |
304 |
Q |
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| T |
8666127 |
ccataggtgaaacttctagtgtgcataggtcttgtacaaacttcggcagtacaacatcagtaagatattgactaacttttctcacactttcttcatcagc |
8666028 |
T |
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| Q |
305 |
tgctatttc |
313 |
Q |
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||||||||| |
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| T |
8666027 |
tgctatttc |
8666019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 8666328 - 8666252
Alignment:
| Q |
20 |
gcaaatcagatatagtataagaagtgtctatcaaaagacaaatgaagatatatcaaataaaatggcatgcaattcac |
96 |
Q |
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||||||||| |||||| || || ||||||||||||||||| ||||||||||||||||||||||| || |||||| |
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| T |
8666328 |
gcaaatcaggaatagtacaataaatgtctatcaaaagacaaggaaagatatatcaaataaaatggcacgcgattcac |
8666252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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