View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_52 (Length: 317)
Name: NF17452_high_52
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_52 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 39305913 - 39305600
Alignment:
| Q |
1 |
atatacagggaagacaagagccaatgaaatatcctgatttcacttggaaacaatttttcgagtttacacaaaggaagcatagggctgatcccaacactct |
100 |
Q |
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| T |
39305913 |
atatactgggaagacaagagccaacgaaatatcctgatttcacttggaaacaatttttcgagtttacacaaaggaagcatagggctgatcccaacactct |
39305814 |
T |
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| Q |
101 |
tccagatttcgtctcgtggattaattccaactcaagcttctagttactggggagtttggttctgattaagattgcatttcagatatataataattgctac |
200 |
Q |
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| T |
39305813 |
tccagatttcgtctcgtggattaattccaactcaagcttctagttactggggagtttgtttctgattaagattgcatttcagatatataataattgctac |
39305714 |
T |
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| Q |
201 |
ctttgttgttaccatattttctatgtatacctgcgtagaataataatatctacgaacaaacatttagtgtagctcataataaaatgaagtgcacccaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39305713 |
ctttgttgttaccatattttctatgtatacctgcgtagaat---aatatctacgaacaaacatttagtgtagctcataataaaatgaattgcacccaaac |
39305617 |
T |
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| Q |
301 |
aatatgaactatatttt |
317 |
Q |
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||||||||||||||||| |
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| T |
39305616 |
aatatgaactatatttt |
39305600 |
T |
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