View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_58 (Length: 289)
Name: NF17452_high_58
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_58 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 23165882 - 23165616
Alignment:
| Q |
10 |
catcatcatgaagcaatattgaatcttaattcactatcaatggacatttctggtataagaaatgaaaaagatgtatagttttatccaagttaaaaccact |
109 |
Q |
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| T |
23165882 |
catcattatggagcaatattgaatcttaattcactatcaatggacatttctggtataagaaatgaaaaagatgtatagttttatccaagttaaaaccact |
23165783 |
T |
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| Q |
110 |
tttaatgtgaacggtcacttatatctgattggtataagaggcactctggtaattttgtgattattctcatagtcaaaataggatgacttcagagtttttt |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23165782 |
tttaatttgaacggtcacttatatctgattggtataagaggcactctggtaattatgtgattattctcatagtcaaaataggatgacttcagagtttttt |
23165683 |
T |
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| Q |
210 |
ctacaaataga-----tgttgttgtgcagaacaaaaatcagtagacagatagggtaagtacctgttc |
271 |
Q |
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||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23165682 |
ctacaaatagatgaattgttgttgtgcacaacaaaaatcagtagacagatagggtaagtacctgttc |
23165616 |
T |
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