View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_61 (Length: 287)
Name: NF17452_high_61
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_61 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 61 - 275
Target Start/End: Complemental strand, 39305545 - 39305334
Alignment:
| Q |
61 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctc- |
159 |
Q |
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| T |
39305545 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctca |
39305446 |
T |
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| Q |
160 |
nnnnnnnntctaagcattctcttagcacgtcaaaattaattaattatgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
259 |
Q |
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| T |
39305445 |
aaaaaaaatctaagcattctctaagcacgtcaa----aattaattatgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
39305350 |
T |
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| Q |
260 |
cagaatcctctgatga |
275 |
Q |
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||||||||||| |||| |
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| T |
39305349 |
cagaatcctctcatga |
39305334 |
T |
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