View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_high_65 (Length: 273)
Name: NF17452_high_65
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_65 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 48235395 - 48235659
Alignment:
| Q |
9 |
tattattcttagtatcagtaaaaacttgattatcattacatccaaggcctcttaatctattaagctctggaagcacaactgatgcaagatttggcctatc |
108 |
Q |
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| T |
48235395 |
tattattcttagtatcagtaaaaacttgattatcattaaatccaaggcctcttaatctattaagctctggaagcacaactgatgcaagatttggcctatc |
48235494 |
T |
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| Q |
109 |
tttcttgcagagttctgcacaattcaatgctaattttgcaaatgatagagcctcttcaactggccaatcagtcaccgcagaatcaagaatctccgaaaac |
208 |
Q |
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| T |
48235495 |
tttcttgcagagttctgcacaattcaatgctaattttgcaaatgatagagcctcttcaactggccaatcagtcaccgcagaatcaagaatctctgaaaac |
48235594 |
T |
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| Q |
209 |
tgctccttttcaattgcccttttaacatgatgagaaagtcccataggaggcctggctgtgattat |
273 |
Q |
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| T |
48235595 |
tggtccttttcaattgcccttttaacatgatgagaaagtcccataggaggcctggctgtgattat |
48235659 |
T |
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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 3686899 - 3686844
Alignment:
| Q |
215 |
ttttcaattgcccttttaacatgatgagaaagtcccataggaggcctggctgtgat |
270 |
Q |
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| T |
3686899 |
ttttcaattgcccttttaacatgatgagaaagtcccattggaggcttagctgtgat |
3686844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 42674307 - 42674255
Alignment:
| Q |
131 |
ttcaatgctaattttgcaaatgatagagcctcttcaactggccaatcagtcac |
183 |
Q |
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| T |
42674307 |
ttcaaagctaatttagcaagtgataaagcctcttcgaccggccaatcagtcac |
42674255 |
T |
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