View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17452_high_8 (Length: 614)
Name: NF17452_high_8
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 3 - 448
Target Start/End: Original strand, 10286089 - 10286534
Alignment:
| Q |
3 |
ccacctcctcttcaaccaactccaaaacccttccgtataccacccttacccccacaagaaagaattggtctaatagacgaaaatggtgtcatgacagaca |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10286089 |
ccacctcctcttcaaccaactccaaaacccttccgtataccacccttacccccacaagagagaattggtctaatagacgaaaatggtgtcatgacagaca |
10286188 |
T |
|
| Q |
103 |
atttcacagtcagcaacaacgatgacgatgaaacattgttaaattggagcttgaacattaccaacaacaatagtgatacgaattttgtggtggaggaggt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10286189 |
atttcacagtcagcaacaacgatgacgatgaaacattgttaaattggagcttgaacattaccaacaacaatagtgatacgaattttgtggtggaggaggt |
10286288 |
T |
|
| Q |
203 |
gaagaaagtgaagaagtataagatttgtaaggatgtgagaatggtggattatataccttgtttggataattttgaagagattgccaagtttaatggaagt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10286289 |
gaagaaagtgaagaagtataagatttgtaaggatgtgagaatggtggattatataccttgtttggataattttgaagagattgccaagtttaatggaagt |
10286388 |
T |
|
| Q |
303 |
gaaagaggggagaaatatgaacgccattgtccagaacaagagaagggtttggattgtgttgttcccaggccgaagggttataggaagccgattctttggc |
402 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||| |||||||| ||||||||||||||||||| |
|
|
| T |
10286389 |
gaaagaggggagaaatatgaacgtcattgtccggaacaagagaagggtttgaattgtgttgttcctcggcctaagggttacaggaagccgattctttggc |
10286488 |
T |
|
| Q |
403 |
ccaagagtagagatgaggtgaggtactactacttttcgggtttttt |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10286489 |
ccaagagtagagatgaggtgaggtactactactttttgggtttttt |
10286534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 518 - 593
Target Start/End: Original strand, 10286658 - 10286733
Alignment:
| Q |
518 |
taatattttgaagtgtattaatttgagaatcgtcgatcgaattagttcttttggatcggtcaattatgcatgtttg |
593 |
Q |
| |
|
|||||||||||||| | |||||||||||||| ||||||||||||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
10286658 |
taatattttgaagtttcttaatttgagaatcttcgatcgaattagttgttttgaatcggtcaattatgtatgtttg |
10286733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University