View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_10 (Length: 605)
Name: NF17452_low_10
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 16 - 594
Target Start/End: Original strand, 52850678 - 52851256
Alignment:
| Q |
16 |
acaattatatgctatttttatgtcatatatcaagttttcacactattttcatgccacaattactgaacagcctgctgtctctaacccgtgagaggaaaat |
115 |
Q |
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| T |
52850678 |
acaattatatgctatttttatgtcatatatcaagttttcacactattttcatgccacaattactgaacagcctgctgtctctaacccgtgagaggaaaat |
52850777 |
T |
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| Q |
116 |
gctcagtaagcaagtgcataagaagttttcgaggaagggaagagaggaactatacctgaagtggggtattgatttgaagacaaaacacagaagtatacaa |
215 |
Q |
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| T |
52850778 |
gctcagtaagcaagtgcataagaagttttcgaggaagggaagagaggaactatacctgaagtggggtattgatttgaagacaaaacacagaagtatacaa |
52850877 |
T |
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| Q |
216 |
ttggcatggctcatatggacggatacaagagatttgaaccacataagagaaagtgctgcgcttgttgcaaagttggttggttttattaacacggccgaga |
315 |
Q |
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| T |
52850878 |
ttggcatggctcatatggacggatacaagagatttgaaccacataagagaaagtgctgcgcttgttgcaaagttggttggttttattaacacgggtgaga |
52850977 |
T |
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| Q |
316 |
cctcaaagaaaacttttggatttggcttcttaagccgacgtaagagcataaaatcccttagttggaaggacacaatgtctaccctttaatagagctagct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52850978 |
cctcaaagaaaacttttggatttggcttcttaagccgacgtaagagcataaaatcccttagttggaaggacacaatgtctaccctttaatagagctagct |
52851077 |
T |
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| Q |
416 |
tgaggggggaaaaaggggacatttcagcaattcaaactcaggtcggttaaattagtgttgcagtttacttctacttttatcttctaggtttcgttctatc |
515 |
Q |
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||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52851078 |
tga-gggggaaaaaggggacatttcagcaatttaaattcaggtcggttaaattagtgttgcagtttacttctacttttatcttctaggtttcgttctatc |
52851176 |
T |
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| Q |
516 |
attg-nnnnnnntgtaagatgatagtgattaaattaaagtaaatgcttcctacctatattcatcttcatcatctattcat |
594 |
Q |
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| T |
52851177 |
attgaaaagaaatgtaagatgatagtgattaaattaaagtaaatgcttcctacctatattcatcttcatcatctattcat |
52851256 |
T |
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