View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_11 (Length: 603)

Name: NF17452_low_11
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_11
NF17452_low_11
[»] chr7 (15 HSPs)
chr7 (1-588)||(4059239-4059824)
chr7 (1-76)||(8839337-8839413)
chr7 (1-77)||(19477304-19477381)
chr7 (1-77)||(29059814-29059891)
chr7 (1-77)||(31492112-31492189)
chr7 (25-77)||(28537424-28537476)
chr7 (4-80)||(40211965-40212042)
chr7 (4-120)||(20207510-20207626)
chr7 (24-68)||(24172240-24172284)
chr7 (24-102)||(46373706-46373784)
chr7 (1-77)||(13254156-13254233)
chr7 (29-78)||(24512664-24512713)
chr7 (1-76)||(35707856-35707931)
chr7 (28-77)||(2657891-2657940)
chr7 (28-80)||(31717917-31717969)
[»] chr6 (13 HSPs)
chr6 (6-117)||(31489529-31489641)
chr6 (1-78)||(21910214-21910292)
chr6 (1-81)||(27735487-27735567)
chr6 (1-76)||(28099252-28099328)
chr6 (1-78)||(12411157-12411235)
chr6 (23-77)||(12836952-12837006)
chr6 (1-85)||(278401-278485)
chr6 (1-77)||(31107548-31107625)
chr6 (1-76)||(14561050-14561128)
chr6 (41-92)||(34828673-34828724)
chr6 (1-80)||(5944851-5944931)
chr6 (1-52)||(21029063-21029115)
chr6 (1-80)||(28933147-28933227)
[»] chr4 (17 HSPs)
chr4 (2-77)||(14854615-14854691)
chr4 (41-120)||(3649058-3649137)
chr4 (1-77)||(45994531-45994608)
chr4 (1-78)||(38766098-38766176)
chr4 (1-77)||(31307121-31307198)
chr4 (1-78)||(38844222-38844300)
chr4 (1-85)||(13686610-13686696)
chr4 (3-80)||(35972354-35972432)
chr4 (24-77)||(46016182-46016235)
chr4 (28-80)||(17135133-17135185)
chr4 (1-120)||(22189400-22189520)
chr4 (4-74)||(11140469-11140540)
chr4 (41-80)||(29597523-29597562)
chr4 (1-78)||(35334152-35334230)
chr4 (1-70)||(37626528-37626598)
chr4 (26-135)||(13948589-13948698)
chr4 (45-125)||(47023456-47023536)
[»] chr3 (7 HSPs)
chr3 (1-78)||(30996019-30996097)
chr3 (1-77)||(48204366-48204443)
chr3 (9-78)||(27763738-27763808)
chr3 (1-77)||(42514613-42514692)
chr3 (27-80)||(46725461-46725514)
chr3 (1-76)||(38088644-38088720)
chr3 (27-91)||(48211001-48211065)
[»] chr2 (19 HSPs)
chr2 (1-78)||(42745170-42745248)
chr2 (1-77)||(5394406-5394482)
chr2 (1-77)||(18105417-18105494)
chr2 (1-77)||(44732628-44732705)
chr2 (1-76)||(993763-993838)
chr2 (28-80)||(17672668-17672720)
chr2 (1-78)||(31579283-31579361)
chr2 (1-77)||(12133285-12133362)
chr2 (28-80)||(17627596-17627648)
chr2 (40-80)||(17658511-17658551)
chr2 (2-72)||(9438196-9438267)
chr2 (4-74)||(37568785-37568856)
chr2 (27-77)||(7157534-7157584)
chr2 (42-80)||(35476224-35476262)
chr2 (41-77)||(17981548-17981584)
chr2 (28-84)||(35555619-35555675)
chr2 (29-69)||(38463993-38464033)
chr2 (2-93)||(42905666-42905755)
chr2 (41-77)||(44752249-44752285)
[»] scaffold0182 (1 HSPs)
scaffold0182 (1-77)||(26340-26417)
[»] chr8 (14 HSPs)
chr8 (1-77)||(2743942-2744019)
chr8 (1-78)||(13468799-13468877)
chr8 (1-77)||(12958140-12958217)
chr8 (1-77)||(15682938-15683015)
chr8 (9-77)||(19715781-19715850)
chr8 (1-133)||(36994499-36994632)
chr8 (32-80)||(44639024-44639072)
chr8 (1-77)||(4125079-4125156)
chr8 (1-77)||(30056056-30056133)
chr8 (26-80)||(8878147-8878201)
chr8 (47-80)||(11363324-11363357)
chr8 (1-77)||(30936013-30936090)
chr8 (41-118)||(43003707-43003784)
chr8 (1-80)||(16701431-16701511)
[»] chr1 (12 HSPs)
chr1 (1-76)||(22022129-22022205)
chr1 (1-80)||(36982364-36982444)
chr1 (1-69)||(17600561-17600630)
chr1 (3-78)||(18428195-18428271)
chr1 (28-80)||(35692522-35692574)
chr1 (28-78)||(9781043-9781093)
chr1 (23-85)||(25655311-25655373)
chr1 (38-120)||(33720987-33721069)
chr1 (2-77)||(16756092-16756168)
chr1 (25-80)||(32883622-32883677)
chr1 (27-85)||(24801417-24801475)
chr1 (27-78)||(12035585-12035637)
[»] chr5 (7 HSPs)
chr5 (4-77)||(2798370-2798444)
chr5 (1-78)||(10591936-10592014)
chr5 (1-77)||(31113343-31113420)
chr5 (4-77)||(2804537-2804611)
chr5 (29-83)||(35914460-35914513)
chr5 (23-76)||(12682667-12682720)
chr5 (1-76)||(30785042-30785118)
[»] scaffold0189 (1 HSPs)
scaffold0189 (13-80)||(10973-11041)


Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 588
Target Start/End: Complemental strand, 4059824 - 4059239
Alignment:
Q  1 gtctcttttagcttaactaaggtctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatac 100  Q
    ||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||    
T  4059824 gtctcttttagtttaaccaaggtctgagttcgaatacagccttgagcatgcaacatcgttaaaactcttagagagagttttccgtttatttgggtcacac 4059725  T
Q  101 aagattcgaggaattagtctatgcagctgcacgcgcataaaatatttgatttacaccnnnnnnntgtgccacgtatttttgtgatacaatctgtttgtaa 200  Q
    |||| |||||| ||||||||||| || |||| ||||| |||||||||||||||||||       ||||||||||||||||||||||||||||||||||||    
T  4059724 aagactcgagggattagtctatgaagttgcatgcgcagaaaatatttgatttacaccaataaaatgtgccacgtatttttgtgatacaatctgtttgtaa 4059625  T
Q  201 caagtgttttcccttctcttcaatttcccgtgaaaactagtagaataattttgtatgattttgacattcttctttgagagtcaagttcttcacatacata 300  Q
     || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  4059624 taaatgttttcccttctcttcaatttcgcgtgaaaactagtagaataatattgtatgattttgacattcttctttgagagtcaagttcatcacatagata 4059525  T
Q  301 tgagagaaggataatttgcatgtgggagctaatacaacaaaaa-ggtttttaagtcacgtcgcatgtgagcttgtgaggattcacacgtgtgagccaaat 399  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  4059524 tgagagaaggataatttgcatttgggagctaatacaacaaaaatggtttttaagtcacgtcgcatgtaagcttgtgagggttcacacgtgtgagccaaat 4059425  T
Q  400 ctatnnnnnnnnnncgtgttttgtgtcgcatcataaatagacggtgaaatggtgagtagaacaataggaatgtctaaattcccacttttgcatcatatag 499  Q
    |||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4059424 ctaaaaaaaaaaaccgtgttttgtgtcgcatcataaatagacggtgaaatggtgagtagaacaataggaatgtctaaattcccacttttgcatcatatag 4059325  T
Q  500 gaatggatgcgttcgggcatcgagggattcaattgtttcatccggacccccttgtgtgaaccctgtctaaaccgtaactgtgtttgttg 588  Q
    ||| ||  | ||||||||||||||||||||||   ||||||| |||||| | ||||| || ||| ||||||||||||  ||||||||||    
T  4059324 gaacgggcgggttcgggcatcgagggattcaa---tttcatctggacccgcctgtgtaaatcctatctaaaccgtaaacgtgtttgttg 4059239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8839413 - 8839337
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| || ||||||||||||||||||||    
T  8839413 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactcttagggaga 8839337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 19477381 - 19477304
Alignment:
Q  1 gtctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| ||||| ||||||| |||| || ||||||||||||||||  ||||||||||||||||||||    
T  19477381 gtctcttctagcttaaccaaggttctgggtttgaatccagccttgggcatgcaacagtgttaaaactcttagggagag 19477304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 29059814 - 29059891
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  29059814 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 29059891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31492112 - 31492189
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  31492112 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 31492189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 28537424 - 28537476
Alignment:
Q  25 tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||||||| || |||||||||||||||| |||||||||||||||||||||    
T  28537424 tgggttcgaatccagccttgggcatgcaacaacgttaaaactcttagggagag 28537476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 4 - 80
Target Start/End: Original strand, 40211965 - 40212042
Alignment:
Q  4 tcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||||||||  |||||| ||||||| ||| ||  ||||||||||||||| |||||||||||||||| |||||||    
T  40211965 tcttttagcttaatcaaggtcatgggttcaaatccagtcttgggcatgcaacaacgttaaaactcttaggaagagttt 40212042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 20207510 - 20207626
Alignment:
Q  4 tcttttagcttaactaaggtctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaag 103  Q
    |||| ||||||||||||| | ||||||| ||| || |||| |||||| |||| |||||||||||||| |||||| || |||   ||||||||| |||||     
T  20207510 tcttctagcttaactaagatttgggttctaattcagccttaggcatgtaacaacgttaaaactcttaaggagagcttgccgcgcatttggatcctacaat 20207609  T
Q  104 attcgaggaattagtct 120  Q
      |||||| ||||||||    
T  20207610 gctcgagggattagtct 20207626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 24172240 - 24172284
Alignment:
Q  24 ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactct 68  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  24172240 ctgggttcgaatccaaccttgggcatgcaacaacgttaaaactct 24172284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 46373706 - 46373784
Alignment:
Q  24 ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaa 102  Q
    |||||||||||| ||  ||||||||| ||||||||||||||||| ||||||||| || |||  ||||||| ||| ||||    
T  46373706 ctgggttcgaatccagtcttgggcatacaacatcgttaaaactcgtagggagagcttgccgcctatttgggtcacacaa 46373784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 13254233 - 13254156
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| || |||||||| || |||| |||||||| || |||| ||||||||||||||||    
T  13254233 gtctcttctagcttaaccaaggtcctgagttcgaatccagccttaggcatgcagcagcgttgaaactcttagggagag 13254156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 24512664 - 24512713
Alignment:
Q  29 ttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||||||||||||| ||| ||||| ||||||||||||| ||||||||    
T  24512664 ttcgaatacaaccttggacatccaacaacgttaaaactcttggggagagt 24512713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 35707856 - 35707931
Alignment:
Q  1 gtctcttttagcttaactaaggtctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    ||||||| ||| ||||| |||||   ||||||||| |||| |||| ||||||||| |||||||| |||||||||||    
T  35707856 gtctcttctagtttaaccaaggttctggttcgaatccaactttggacatgcaacaacgttaaaattcttagggaga 35707931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 2657940 - 2657891
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||| |||||| ||||||||||||| || |||||||||||||| ||||||    
T  2657940 gttcaaatacagccttgggcatgcagcaacgttaaaactcttaaggagag 2657891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 80
Target Start/End: Complemental strand, 31717969 - 31717917
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||| ||||||| | |||||| || |||||||||||||||| |||||||    
T  31717969 gttcgaatccaaccttagacatgcagcaacgttaaaactcttaggaagagttt 31717917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 31489529 - 31489641
Alignment:
Q  6 ttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaaga 104  Q
    |||||||||||  ||||| ||||||| ||||||| | ||||| ||||| || |||||||||| |||||||||||||||||||||||||  ||| |||| |    
T  31489529 ttttagcttaatcaaggttctgggtttgaatacagctttgggtatgcagcaacgttaaaacttttagggagagttttccgtttatttgagtcacacaaaa 31489628  T
Q  105 ttcgaggaattag 117  Q
    ||||||| |||||    
T  31489629 ttcgagggattag 31489641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 21910214 - 21910292
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||||||||| ||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||||||    
T  21910214 gtctcttctagcttaaccaagatcctgggttcgaatccagccttgggcatgcaacatcgttaaaactcttagagagagt 21910292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 27735487 - 27735567
Alignment:
Q  1 gtctcttttagcttaactaaggtctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagtttt 81  Q
    ||||||||||||||||| || ||||| |||||||||||||||||| |||| | |   |||||||||||||| || ||||||    
T  27735487 gtctcttttagcttaaccaatgtctgagttcgaatacaaccttggacatggagcggtgttaaaactcttagagaaagtttt 27735567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28099252 - 28099328
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    ||||||| || ||||||||||||| ||||||||||| || ||||||||||||| ||  ||||||||| |||||||||    
T  28099252 gtctcttctaccttaactaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaacttttagggaga 28099328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12411157 - 12411235
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| || |||||| |||||| || |||||||| || ||||||||||||| || |||||||||||||||| |||||    
T  12411157 gtctcttctaacttaaccaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttaggaagagt 12411235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 12837006 - 12836952
Alignment:
Q  23 tctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||||||||| || |||| |||||||| || |||||||||||||||||||||    
T  12837006 tctgggttcgaatccagccttaggcatgcagcagcgttaaaactcttagggagag 12836952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 278401 - 278485
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgt 85  Q
    ||||||| |||||||||||||||| || ||| |||| || | |||||||||||||| | |||||||||||| ||||||||| ||||    
T  278401 gtctcttctagcttaactaaggtcttgagtttgaatccagctttgggcatgcaaca-cattaaaactcttatggagagtttgccgt 278485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31107625 - 31107548
Alignment:
Q  1 gtctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| || |||||||||||| ||| |||||||| || | |||| ||||||||| ||||||||||||| |||||||    
T  31107625 gtctcttctaacttaactaaggttctgagttcgaatccagcattggacatgcaacagcgttaaaactctttgggagag 31107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14561050 - 14561128
Alignment:
Q  1 gtctcttttagcttaactaaggtc---tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    |||||||||| |||||||||||||   | |||| |||| ||||||||  | | ||||||||||||||||||||||||||    
T  14561050 gtctcttttatcttaactaaggtcatataggtttgaatccaaccttgaacgtacaacatcgttaaaactcttagggaga 14561128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 34828724 - 34828673
Alignment:
Q  41 cttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttg 92  Q
    ||||| ||||||||| |||||||||| ||||||||||||| ||||| |||||    
T  34828724 cttggacatgcaacaacgttaaaacttttagggagagtttgccgttcatttg 34828673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 5944851 - 5944931
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||||| |||||| |||||| || |||||||| ||  ||| | |||| ||||| ||||||||| |||||||||||||    
T  5944851 gtctcttttaacttaaccaaggtcctgagttcgaattcagtctttgacatgtaacattgttaaaacttttagggagagttt 5944931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 21029115 - 21029063
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgca 52  Q
    ||||||| ||||||||| ||||||| |||||||||| || |||||||||||||    
T  21029115 gtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgca 21029063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 28933147 - 28933227
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||||| ||||||||| ||| ||  || |||| || |||| | |||||||||||||||||| |||||| ||||||||    
T  28933147 gtctcttttatcttaactaaagtcctgattttgaattcagccttagacatgcaacatcgttaaaattcttagagagagttt 28933227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 14854615 - 14854691
Alignment:
Q  2 tctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||||| ||||||||| ||||| |||||||||||| || ||||||||||||| ||||||||||||||||||||||||    
T  14854615 tctcttctagcttaaccaaggttctgggttcgaatccagccttgggcatgcagcatcgttaaaactcttagggagag 14854691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 3649137 - 3649058
Alignment:
Q  41 cttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaagattcgaggaattagtct 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||  |||||| |||| | ||||||||    
T  3649137 cttgggcatgcaacaacgttaaaactcttagggagagttttccgctcatttggatcgcacaagactcgaaggattagtct 3649058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 45994531 - 45994608
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||| ||||||| || |||||||||||||||| |||||||||||||||||||||    
T  45994531 gtctcttctagcttaaccaaggtcctggattcgaatccagccttgggcatgcaacaacgttaaaactcttagggagag 45994608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38766098 - 38766176
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||||||||| |||||| |||||| |||| || ||||||||||||| || ||||||||||||||||||||||    
T  38766098 gtctcttctagcttaaccaaggtcctgggtttgaatccagccttgggcatgcagcagcgttaaaactcttagggagagt 38766176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31307198 - 31307121
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  31307198 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 31307121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 38844300 - 38844222
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||||||||| |||||| || |||||||| || | |||||||||||||| |||||||||||||||| |||||    
T  38844300 gtctcttctagcttaaccaaggtcatgagttcgaatccagctttgggcatgcaacagcgttaaaactcttaggaagagt 38844222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 13686610 - 13686696
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactctt-agggagagttttccgt 85  Q
    ||||||| | ||||||| |||||| ||||||||||| || |||||||| |||| || ||||||||||||| ||||||||||| ||||    
T  13686610 gtctcttcttgcttaaccaaggtcctgggttcgaatccatccttgggcgtgcagcagcgttaaaactcttaagggagagtttgccgt 13686696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 35972354 - 35972432
Alignment:
Q  3 ctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    ||||| ||||||||| ||||||| |||||||||| || || ||||||| || || |||||||||| |||||||||||||    
T  35972354 ctcttctagcttaaccaaggtcttgggttcgaatccagccatgggcatacagcagcgttaaaactattagggagagttt 35972432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 46016182 - 46016235
Alignment:
Q  24 ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  46016182 ctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 46016235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 17135133 - 17135185
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||| || ||||| ||||||| || ||||||||||||||||||||||||    
T  17135133 gttcgaatccagccttgtgcatgcagcagcgttaaaactcttagggagagttt 17135185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 22189520 - 22189400
Alignment:
Q  1 gtctcttttagcttaactaaggtctgg-gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcata 99  Q
    ||||||| ||||||||| ||||||  | |||||||| |||||||| ||||||| || | |||||||||||||| |||| || |||  ||| ||| ||  |    
T  22189520 gtctcttctagcttaaccaaggtccagagttcgaatccaaccttgtgcatgcagcaacattaaaactcttaggtagagattgccgcctatatgggtccca 22189421  T
Q  100 caagattcgaggaattagtct 120  Q
    ||||  |||||||||||||||    
T  22189420 caaggctcgaggaattagtct 22189400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Original strand, 11140469 - 11140540
Alignment:
Q  4 tcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttaggga 74  Q
    |||| ||||||||| |||||| ||| ||||||| || ||||||||||||| || | ||||||||||||||||    
T  11140469 tcttctagcttaaccaaggtcctggtttcgaatccagccttgggcatgcagcagctttaaaactcttaggga 11140540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 41 - 80
Target Start/End: Original strand, 29597523 - 29597562
Alignment:
Q  41 cttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    ||||||||||||||| ||||||||||||||| ||||||||    
T  29597523 cttgggcatgcaacaacgttaaaactcttagagagagttt 29597562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 35334230 - 35334152
Alignment:
Q  1 gtctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||||||||| ||||| || |||||| || || ||||||||||||| ||  |||||||||||||| ||||||    
T  35334230 gtctcttctagcttaaccaaggttcttggttcgtattcagccttgggcatgcagcagagttaaaactcttagagagagt 35334152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 37626528 - 37626598
Alignment:
Q  1 gtctcttttagcttaactaaggtctgggttcg-aatacaaccttgggcatgcaacatcgttaaaactctta 70  Q
    ||||||| || |||||||||||||| |||| | ||||||||||| |||||||| || |||| |||||||||    
T  37626528 gtctcttctaacttaactaaggtcttggtttggaatacaaccttaggcatgcatcaacgttgaaactctta 37626598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 135
Target Start/End: Complemental strand, 13948698 - 13948589
Alignment:
Q  26 gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaagattcgaggaattagtctatgca 125  Q
    |||||||||| || ||||||| ||||| ||  ||||||||||||||||||||| | ||||  ||||| |||  ||||   |||||| |||||||| ||||    
T  13948698 gggttcgaatccagccttgggtatgcagcagtgttaaaactcttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgca 13948599  T
Q  126 gctgcacgcg 135  Q
    | ||| ||||    
T  13948598 gttgcgcgcg 13948589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 45 - 125
Target Start/End: Original strand, 47023456 - 47023536
Alignment:
Q  45 ggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaagattcgaggaattagtctatgca 125  Q
    |||||||||||  |||||||||||||||||||||||  |||  |||||| ||  |||||| |||| | |||||||| ||||    
T  47023456 ggcatgcaacaaagttaaaactcttagggagagtttgtcgtccatttgggtcccacaagactcgaaggattagtctctgca 47023536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 30996097 - 30996019
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| || |||||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  30996097 gtctcttctatcttaaccaaggtcctgggttcgaatccgaccttgggcatgcaacagcgttaaaactcttagggagagt 30996019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 48204443 - 48204366
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| ||||||| |||||||||| || ||||||||||||| || ||||||||| |||||||||||    
T  48204443 gtctcttctagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaacgttaaaacccttagggagag 48204366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 27763738 - 27763808
Alignment:
Q  9 tagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||||| |||||| ||||||||||| || |||||||||| |||||  |||||||||||||||||||||    
T  27763738 tagcttaaccaaggtcctgggttcgaatccagccttgggcatacaacagtgttaaaactcttagggagagt 27763808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 42514613 - 42514692
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcg--ttaaaactcttagggagag 77  Q
    ||||||| |||||||||||| |||| |||||||||| |||| ||||||||||| || ||  |||||||||||||||||||    
T  42514613 gtctcttctagcttaactaaagtcttgggttcgaatccaactttgggcatgcatcagcgcgttaaaactcttagggagag 42514692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 46725461 - 46725514
Alignment:
Q  27 ggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||| |||| || |||||||||| ||||| |||||||||||||||||| |||||    
T  46725461 ggtttgaatgcagccttgggcattcaacaacgttaaaactcttagggatagttt 46725514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 38088644 - 38088720
Alignment:
Q  1 gtctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    ||||||| ||||||||| ||||| |  ||||||||| || | |||||||||||  | ||||||||||||||||||||    
T  38088644 gtctcttctagcttaaccaaggttccaggttcgaatccagctttgggcatgcagtagcgttaaaactcttagggaga 38088720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 48211065 - 48211001
Alignment:
Q  27 ggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttattt 91  Q
    ||||||||| || ||||| ||||||| || |||||||||||||| |||||| || |||| |||||    
T  48211065 ggttcgaatccagccttgagcatgcagcaacgttaaaactcttatggagagcttgccgtctattt 48211001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 42745248 - 42745170
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||||||||| ||||||| |||||||||| || ||||||||||||| ||  |||||||||||||||||||||    
T  42745248 gtctcttatagcttaaccaaggtcttgggttcgaatccagccttgggcatgcagcaatgttaaaactcttagggagagt 42745170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 5394406 - 5394482
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| ||| ||||||||||||||||||||    
T  5394406 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcat-gttaaaactcttagggagag 5394482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 18105494 - 18105417
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || |||||||||||||||| |||||||| ||||| ||||||    
T  18105494 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcaacaacgttaaaattcttatggagag 18105417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44732705 - 44732628
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  44732705 gtctcttatagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 44732628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 993763 - 993838
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    ||||||| ||||||||| |||||| ||||||||||| |||||||||||||||| || || |||||||||||||||||    
T  993763 gtctcttatagcttaaccaaggtcctgggttcgaattcaaccttgggcatgcagcagcg-taaaactcttagggaga 993838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 17672668 - 17672720
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||| ||||||||||||||||||| |||||||| |||||||||||||||    
T  17672668 gttcgaatccaaccttgggcatgcaacaacgttaaaattcttagggagagttt 17672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31579361 - 31579283
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||||||||  ||||||| |||||||||| || ||||||||||||||||  ||||||||| |||||||||||    
T  31579361 gtctcttctagcttaatcaaggtcttgggttcgaatccagccttgggcatgcaacagtgttaaaacttttagggagagt 31579283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12133362 - 12133285
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||  |||||| ||||||||||| || |||||| |||||| || |||||||||||||||||||||    
T  12133362 gtctcttctagcttaatcaaggtcatgggttcgaatccagccttggacatgcagcaacgttaaaactcttagggagag 12133285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 17627596 - 17627648
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||| || |||||||||||||||| |||||||| ||||||||| |||||    
T  17627596 gttcgaatccagccttgggcatgcaacaacgttaaaattcttagggaaagttt 17627648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 17658511 - 17658551
Alignment:
Q  40 ccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  17658511 ccttgggcatgcaacaacgttaaaattcttagggagagttt 17658551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 72
Target Start/End: Complemental strand, 9438267 - 9438196
Alignment:
Q  2 tctcttttagcttaactaaggtctg-ggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagg 72  Q
    |||||||||||||||| || ||||  ||||||||| || ||||||||||||| ||  |||||||||||||||    
T  9438267 tctcttttagcttaaccaaagtctttggttcgaatccagccttgggcatgcagcagggttaaaactcttagg 9438196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 74
Target Start/End: Complemental strand, 37568856 - 37568785
Alignment:
Q  4 tcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttaggga 74  Q
    |||| ||||||||| |||||| ||||||||||| || |||| |||||||| ||  |||||||||||||||||    
T  37568856 tcttctagcttaaccaaggtcctgggttcgaatccagccttaggcatgcagcagtgttaaaactcttaggga 37568785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 7157534 - 7157584
Alignment:
Q  27 ggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||||||||  | ||||||||||||| || |||||||||||||||||||||    
T  7157534 ggttcgaatctagccttgggcatgcagcaacgttaaaactcttagggagag 7157584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 35476224 - 35476262
Alignment:
Q  42 ttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  35476224 ttgggcatgcaacattgttaaaactcttcgggagagttt 35476262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 17981548 - 17981584
Alignment:
Q  41 cttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||||||||||| | |||||||||||||||||||    
T  17981548 cttgggcatgcaacaacattaaaactcttagggagag 17981584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 35555619 - 35555675
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccg 84  Q
    |||||||| |||| |||| ||| ||||||||||||| ||| || |||||||||||||    
T  35555619 gttcgaatccaacattggacatacaacatcgttaaatctcctacggagagttttccg 35555675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 38463993 - 38464033
Alignment:
Q  29 ttcgaatacaaccttgggcatgcaacatcgttaaaactctt 69  Q
    ||||||| || |||||||||||||||| |||||||||||||    
T  38463993 ttcgaatccagccttgggcatgcaacaccgttaaaactctt 38464033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 42905755 - 42905666
Alignment:
Q  2 tctcttttagcttaactaaggtctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttgg 93  Q
    |||||||||||||||||||||||   |||||||| ||| ||| | |||||| ||  |||||||||||  || ||||||| |||| |||||||    
T  42905755 tctcttttagcttaactaaggtcctagttcgaatccaaactttgtcatgcagcagtgttaaaactct--ggaagagtttgccgtctatttgg 42905666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 41 - 77
Target Start/End: Complemental strand, 44752285 - 44752249
Alignment:
Q  41 cttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||||||||||| ||||||||||||| |||||||    
T  44752285 cttgggcatgcaacaacgttaaaactctttgggagag 44752249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 26340 - 26417
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  26340 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 26417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 2743942 - 2744019
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  2743942 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagag 2744019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13468877 - 13468799
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||||||||| |||||| ||||||||||| || ||||||||||| | || ||||||||||||||| ||||||    
T  13468877 gtctcttctagcttaaccaaggtcctgggttcgaatccagccttgggcatgtagcagcgttaaaactcttagagagagt 13468799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12958217 - 12958140
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| |||||| |||| || | ||||||||||| || |||||||||||||||||||||    
T  12958217 gtctcttctagcttaaccaaggtcatgggtttgaatccagcattgggcatgcagcagcgttaaaactcttagggagag 12958140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15682938 - 15683015
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||  |||||| || |||||||| || ||||||||||||| || |||||||||||||||||||||    
T  15682938 gtctcttctagcttaatcaaggtcctgagttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagag 15683015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 19715850 - 19715781
Alignment:
Q  9 tagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||||| |||||| ||||||||||| || ||||||||||||| || |||||||||||| ||||||||    
T  19715850 tagcttaaccaaggtcctgggttcgaatccagccttgggcatgcagcagcgttaaaactctcagggagag 19715781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 36994632 - 36994499
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcata 99  Q
    ||||||| ||| ||||| |||||| ||||||||||| || |||||| |||||| || |||||||||||||| ||||||||| | |   |||||| ||  |    
T  36994632 gtctcttctagtttaaccaaggtcctgggttcgaatccagccttggacatgcagcagcgttaaaactcttaaggagagtttgctgcccatttgggtccca 36994533  T
Q  100 caagattcgaggaattagtctatgcagctgcacg 133  Q
    ||||  |||||| |||||||| ||||| ||||||    
T  36994532 caaggctcgagggattagtctctgcagttgcacg 36994499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 44639024 - 44639072
Alignment:
Q  32 gaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||| |||||||| |||||||||| ||||||||||||||||||||||||    
T  44639024 gaatccaaccttgagcatgcaacaacgttaaaactcttagggagagttt 44639072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4125156 - 4125079
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| || ||| |||||||||||  | ||||||||||||| ||  ||||||||||||||||||||    
T  4125156 gtctcttctagcttaaccaatgtcctgggttcgaatcaagccttgggcatgcagcactgttaaaactcttagggagag 4125079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 30056133 - 30056056
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| ||||||||| |||||| ||||||| ||| || |||| |||||||| || | |||||||||||||||||||    
T  30056133 gtctcttctagcttaacgaaggtcatgggttcaaatccagccttaggcatgcagcagcattaaaactcttagggagag 30056056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 8878201 - 8878147
Alignment:
Q  26 gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||||| || | || ||||||||||| |||||||||||||||| |||||||    
T  8878201 gggttcgaatccagctttaggcatgcaacaacgttaaaactcttaggaagagttt 8878147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 80
Target Start/End: Original strand, 11363324 - 11363357
Alignment:
Q  47 catgcaacatcgttaaaactcttagggagagttt 80  Q
    ||||||||||||||||||||| ||||||||||||    
T  11363324 catgcaacatcgttaaaactcctagggagagttt 11363357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 30936013 - 30936090
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    ||||||| || |||||| |||||| || |||||||| || ||||  ||||||| || |||||||||||||||||||||    
T  30936013 gtctcttctaacttaaccaaggtcctgagttcgaatccagccttaagcatgcagcaacgttaaaactcttagggagag 30936090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 43003707 - 43003784
Alignment:
Q  41 cttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaagattcgaggaattagt 118  Q
    |||| ||||||| || | |||||||||||||||||||| |  |||| |||||| |  |||||| ||||||||||||||    
T  43003707 cttgagcatgcagcaacattaaaactcttagggagagtatgtcgttcatttgggttctacaaggttcgaggaattagt 43003784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 16701511 - 16701431
Alignment:
Q  1 gtctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    ||||||| || |||||||||||| |||||||||||| || |||||| ||| ||  | | ||||| ||||||||||||||||    
T  16701511 gtctcttctatcttaactaaggttctgggttcgaatccagccttggacatacagtagctttaaacctcttagggagagttt 16701431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 22022129 - 22022205
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    ||||||| |||||||||||||||  ||||||||||| || ||||||||||||| || | ||||||||||||||||||    
T  22022129 gtctcttctagcttaactaaggttgtgggttcgaatccagccttgggcatgcagcagcattaaaactcttagggaga 22022205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 36982364 - 36982444
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    ||||||| ||| ||||| ||||||| |||||||||| || |||| | ||||||||| ||||||||||||||||||||||||    
T  36982364 gtctcttctagtttaaccaaggtctcgggttcgaattcagccttagacatgcaacaacgttaaaactcttagggagagttt 36982444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 17600630 - 17600561
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactctt 69  Q
    ||||||| ||||||||| ||||||| ||||| |||| || ||||| ||||||||||||||||||||||||    
T  17600630 gtctcttctagcttaaccaaggtcttgggttagaattcagccttgagcatgcaacatcgttaaaactctt 17600561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Complemental strand, 18428271 - 18428195
Alignment:
Q  3 ctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||| ||||||||| ||||| |||| ||||||| |||||||||||||||| ||  ||||||||| |||||||||||    
T  18428271 ctcttgtagcttaaccaaggttctggattcgaatccaaccttgggcatgcagcagtgttaaaacttttagggagagt 18428195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 35692522 - 35692574
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  35692522 gttcgaatccaacattgggcatgcaacgacgttaaaactcttagggagagttt 35692574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Complemental strand, 9781093 - 9781043
Alignment:
Q  28 gttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    |||||||| || ||||||||||||| || ||||||||||||||||||||||    
T  9781093 gttcgaatccagccttgggcatgcagcagcgttaaaactcttagggagagt 9781043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 25655373 - 25655311
Alignment:
Q  23 tctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgt 85  Q
    |||||||||||||  ||| ||||||||||| || ||||||||||||||| |||||||| ||||    
T  25655373 tctgggttcgaatttaacattgggcatgcagcaacgttaaaactcttagagagagtttgccgt 25655311  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 120
Target Start/End: Original strand, 33720987 - 33721069
Alignment:
Q  38 aaccttgggcatgcaacatcgttaaaactcttagggagagttttccgtttatttggatcatacaagattcgaggaattagtct 120  Q
    ||||||| | || ||||||||||||| |||||||||||||||| ||||  |||||||||  ||||| ||||||  ||||||||    
T  33720987 aaccttgagtatacaacatcgttaaatctcttagggagagtttgccgtccatttggatcccacaaggttcgagagattagtct 33721069  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 16756092 - 16756168
Alignment:
Q  2 tctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||||| ||||||||| ||||| ||||||| |||| || | |||||||||||  | |||||||||||||||||||||    
T  16756092 tctcttctagcttaaccaaggttctgggtttgaattcagcattgggcatgcagaagcgttaaaactcttagggagag 16756168  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Complemental strand, 32883677 - 32883622
Alignment:
Q  25 tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    ||||||||||| || | |||| |||||| || ||||||||||||||||||||||||    
T  32883677 tgggttcgaatccagcattggacatgcagcagcgttaaaactcttagggagagttt 32883622  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 24801417 - 24801475
Alignment:
Q  27 ggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttccgt 85  Q
    ||||||||| || |||| |||||||| ||  ||||||||||||||||||||||| ||||    
T  24801417 ggttcgaatccagccttaggcatgcagcactgttaaaactcttagggagagtttaccgt 24801475  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 12035585 - 12035637
Alignment:
Q  27 ggttcgaatacaaccttgggcatgcaacatcgtt-aaaactcttagggagagt 78  Q
    ||||||||| || |||| |||||||||||| ||| ||||||||||||||||||    
T  12035585 ggttcgaatccagcctttggcatgcaacattgttaaaaactcttagggagagt 12035637  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 2798444 - 2798370
Alignment:
Q  4 tcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||| ||||||||| ||||| |||||||||||| |||||||| ||||||| || |||||||||| ||||||||||    
T  2798444 tcttctagcttaaccaaggttctgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagag 2798370  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 10591936 - 10592014
Alignment:
Q  1 gtctcttttagcttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagt 78  Q
    ||||||| ||| ||||| |||||| ||||||||||| || ||||||||||||| ||  |||||||||||||||||||||    
T  10591936 gtctcttctagattaaccaaggtcctgggttcgaatccagccttgggcatgcagcagtgttaaaactcttagggagagt 10592014  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31113343 - 31113420
Alignment:
Q  1 gtctcttttagcttaactaaggt-ctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||| ||||||||||| |||||| || ||||||||| || ||||||||||||| ||  ||||||||||||||||||||    
T  31113343 gtcttttttagcttaattaaggttctaggttcgaattcagccttgggcatgcagcagtgttaaaactcttagggagag 31113420  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 2804611 - 2804537
Alignment:
Q  4 tcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagag 77  Q
    |||| ||||||||| ||||| | |||||||||| |||||||| ||||||| || |||||||||| ||||||||||    
T  2804611 tcttctagcttaaccaaggttttgggttcgaatccaaccttgagcatgcagcagcgttaaaacttttagggagag 2804537  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 35914460 - 35914513
Alignment:
Q  29 ttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttttcc 83  Q
    ||||||| |||| |||||||||||||| |||| | ||||||||||||||||||||    
T  35914460 ttcgaatccaacattgggcatgcaacaacgtt-acactcttagggagagttttcc 35914513  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 12682667 - 12682720
Alignment:
Q  23 tctgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    |||| |||||||| || ||||| |||||||||| ||||||||||||| ||||||    
T  12682667 tctgagttcgaatccagccttgagcatgcaacaacgttaaaactcttcgggaga 12682720  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 30785118 - 30785042
Alignment:
Q  1 gtctcttttagcttaactaaggtct-gggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggaga 76  Q
    ||||||| ||||||||  || |||| |||||||||| || | |||| |||||| || ||||||||||||||||||||    
T  30785118 gtctcttctagcttaatcaatgtcttgggttcgaatccagctttggacatgcagcaacgttaaaactcttagggaga 30785042  T

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Target: scaffold0189 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 10973 - 11041
Alignment:
Q  13 ttaactaaggtc-tgggttcgaatacaaccttgggcatgcaacatcgttaaaactcttagggagagttt 80  Q
    |||||||||||| | ||||||||| ||   ||||||||||||||  ||||||||||||| |||||||||    
T  10973 ttaactaaggtcctaggttcgaatccatttttgggcatgcaacaatgttaaaactcttacggagagttt 11041  T

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