View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_12 (Length: 580)
Name: NF17452_low_12
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 556
Target Start/End: Complemental strand, 41654671 - 41654132
Alignment:
| Q |
1 |
gataagatcttctagaaaagaatattgaatccacaactttccaaataatg--ttgatattataaag-----tgtattacaggatgaaaatttaaggagtt |
93 |
Q |
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| T |
41654671 |
gataagatcttctagaaaagaatattgaatccacaactttccaaataaaaaatttaactaattaatgttgatattttacaggatgaaaatttaacgagtt |
41654572 |
T |
|
| Q |
94 |
gactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaagatggtgtactccaacccttccttctatt |
193 |
Q |
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| T |
41654571 |
gactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttgtcttgtaatgcatcatcaagatggtgtactccaacccttccttctatt |
41654472 |
T |
|
| Q |
194 |
gagccgacctacagataaaacaatagtacgtcaagaagattttaatggcataa-----aagcaatacacgaaactgtttaaattaaaatgacggtgtttg |
288 |
Q |
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| T |
41654471 |
gagccgacctacagaaaaaacaata--------------ttttaatggcataatataaaagcaacacacgaaactgtttaaattaaaatgacggtgtttg |
41654386 |
T |
|
| Q |
289 |
agtttgagtttgagtttgtaatgtacaaaacaaatacagcaaaggataatgtgaacataaaattcaagtttcactcctgtatgtttctaactcgacaaat |
388 |
Q |
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| T |
41654385 |
agtttgagtttgagtttgtaatgtacaaaacaaatacagcaaaggata--------------ttcaagtttcactcctgtatggctctaactcgacaaat |
41654300 |
T |
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| Q |
389 |
aatgtcatcatttaatagtatcagtgcaaaagtcttctagcaaataatgcattgataacccaattgtctaaatactgcactacaatgagctaattagagt |
488 |
Q |
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| T |
41654299 |
aatgtcatcatttaatagtatcagtgcaaaagtcttctagcaaataatgcattgataacccaattctctaaatactgcactacaatgagctaattagagt |
41654200 |
T |
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| Q |
489 |
ctccacatacaagctccaatccaagtgtagaattgacccacatcagtacagtgatggaattaaataaa |
556 |
Q |
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| T |
41654199 |
cttcacatacaagctccaatccaagtgtagaattgacccacatcagtacagtgatggaattaaataaa |
41654132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 28816039 - 28816200
Alignment:
| Q |
46 |
taatgttgatattataaagtgtattacaggatgaaaatttaaggagttgactgaatatatgtcattattttctctgtggcatctaaaagtaaaattcttg |
145 |
Q |
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|||| ||||||||||| |||| ||||| ||||| ||||||||||||||||| |||||||| || ||| |||||||||||||| ||||||||||||||||| |
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| T |
28816039 |
taattttgatattatacagtgcattaccggatggaaatttaaggagttgaccgaatatatctcgttactttctctgtggcatttaaaagtaaaattcttg |
28816138 |
T |
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| Q |
146 |
tcttgtaatgcatcatcaagatggtgtactccaacccttccttctattgagccgacctacag |
207 |
Q |
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| T |
28816139 |
ctttgttgtgcatcatcaaggtgatgtactccaacccttccctctattgagccaacctacag |
28816200 |
T |
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