View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17452_low_13 (Length: 561)
Name: NF17452_low_13
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_13 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 28399 - 28935
Alignment:
| Q |
11 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28399 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
28484 |
T |
|
| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28485 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
28584 |
T |
|
| Q |
211 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28585 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
28684 |
T |
|
| Q |
311 |
gcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggattcaaacgatcatatctctccttcttcgaacaaatatctt |
410 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
28685 |
gcaaagttataactctcattggttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatctt |
28784 |
T |
|
| Q |
411 |
cattaacttttcttttatgatgccgacttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggc |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28785 |
cattaacttttcttttatgatgccgacttctgatatcctttgtccatcttttcaatatgtagtgtgatgggacagcaaagataccactatattggagggc |
28884 |
T |
|
| Q |
511 |
catcaatgaatgtctacaaagatacccattatactcaaacaaacgacatat |
561 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28885 |
catcaatgaatgtctacaaagatacccattatactcaaacaaacgacatat |
28935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 275509 - 276045
Alignment:
| Q |
11 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
275509 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctttt |
275594 |
T |
|
| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275595 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagttt |
275694 |
T |
|
| Q |
211 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275695 |
cttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgacat |
275794 |
T |
|
| Q |
311 |
gcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggattcaaacgatcatatctctccttcttcgaacaaatatctt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
275795 |
gcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctccttcttcgaacaaatatctt |
275894 |
T |
|
| Q |
411 |
cattaacttttcttttatgatgccgacttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggc |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
275895 |
cattaacttttcttttatgatgccgacttctgatatcctttgtccatcttttcaatatgtagtgtgatgggacagcaaagataccactatattggagggc |
275994 |
T |
|
| Q |
511 |
catcaatgaatgtctacaaagatacccattatactcaaacaaacgacatat |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
275995 |
catcaatgaatgtctacaaagatacccattatactcaaacaaacaacatat |
276045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 561
Target Start/End: Original strand, 26396113 - 26396650
Alignment:
| Q |
11 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctttt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
26396113 |
cacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgat--------------aaaataataaattccaacctttt |
26396198 |
T |
|
| Q |
111 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttt-cggtgccccttttgtttttgaatcttgaggatcaagtagtt |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396199 |
tcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtagtt |
26396298 |
T |
|
| Q |
210 |
tcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26396299 |
tcttgtcaagcaaagtgctcttcctgctattttcttggctattttttaaggatcggttaaggaatgcacattgtttcaaggcctcttccagtgcatgaca |
26396398 |
T |
|
| Q |
310 |
tgcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggattcaaacgatcatatctctccttcttcgaacaaatatct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |
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|
| T |
26396399 |
tgcaaagttataactctcattagttaatgatccttcctccaacaattgagaggcctttggatacaaacgatcatatctctctttcttcgaacaaatatct |
26396498 |
T |
|
| Q |
410 |
tcattaacttttcttttatgatgccgacttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggaggg |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
26396499 |
tcattaacttttcttttatgatgccgacttctgatatcctttgtccatcttttcaatatgtagtgtgatgggacagcaaagataccactatattggaggg |
26396598 |
T |
|
| Q |
510 |
ccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacatat |
561 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
26396599 |
ccatcaatgaatgtctacaaagatacccattatactcaaacaaacaacatat |
26396650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 560
Target Start/End: Original strand, 19219115 - 19219164
Alignment:
| Q |
511 |
catcaatgaatgtctacaaagatacccattatactcaaacaaacgacata |
560 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||| ||| |||||| |
|
|
| T |
19219115 |
catcaatgaatgtctactaagatatccattaaactcaaataaatgacata |
19219164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
129 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
213 |
Q |
| |
|
||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
|
|
| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 379 - 560
Target Start/End: Complemental strand, 56109571 - 56109390
Alignment:
| Q |
379 |
atcatatctctccttcttcgaacaaatatcttcattaacttttcttttatgatgccgacttctgatatcctttgtccatcttttcaatatgtactgtgat |
478 |
Q |
| |
|
||||||||||||||| | ||||| | |||||| || | | | ||| |||||||| ||||| |||||||| ||||||||| | || || || |||||| |
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|
| T |
56109571 |
atcatatctctccttactagaacacacatcttctttcattatccttgtatgatgcttgcttctaatatccttggtccatcttcttaaaatatagtgtgat |
56109472 |
T |
|
| Q |
479 |
gggacagcaaagataccactatattggagggccatcaatgaatgtctacaaagatacccattatactcaaacaaacgacata |
560 |
Q |
| |
|
|||||| || ||| |||| | ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
56109471 |
gggacaacacagacaccaacagcttggaatgccatcaatgaatgtctacaaagatacccattatactcaaaaaagcgacata |
56109390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 437 - 560
Target Start/End: Complemental strand, 26015279 - 26015156
Alignment:
| Q |
437 |
cttctgatatcctttgtccatcttttcaatatgtactgtgatgggacagcaaagataccactatattggagggccatcaatgaatgtctacaaagatacc |
536 |
Q |
| |
|
||||| |||||||| ||||||||| | || || || |||||||||||| || ||| |||| | ||||| |||||||||||||||||||||||||||| |
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|
| T |
26015279 |
cttctaatatccttggtccatcttcttaaaatatagtgtgatgggacaacacagacaccaacaacttggaatgccatcaatgaatgtctacaaagatacc |
26015180 |
T |
|
| Q |
537 |
cattatactcaaacaaacgacata |
560 |
Q |
| |
|
||||||||||||| || ||||||| |
|
|
| T |
26015179 |
cattatactcaaaaaagcgacata |
26015156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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