View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_17 (Length: 536)
Name: NF17452_low_17
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 518
Target Start/End: Original strand, 1248974 - 1249489
Alignment:
| Q |
11 |
atcatcatgtatgttctatcaaaaaaatattatgtttgaaccnnnnnnnnnnnc--tatgtatgtgtacttcactgaaccttttttccatggtaannnnn |
108 |
Q |
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| T |
1248974 |
atcatcatgtatgttctatcaaaaagatattatgtttgaaccaaaaaaaataaaattatgtatgtgtacttcactgaaccttttttccatggtaattttt |
1249073 |
T |
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| Q |
109 |
nn---aataagtcaaaataaaatatatttttacaaacaaagcattgaaccaaatacaacgagtgtcaagactaaacacttatggtttacaaaagttacaa |
205 |
Q |
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| T |
1249074 |
tttttaataagtcaaaataaaatatatttttacaaacaaaacattgaacccaatacaacgagtgtcaagactaaacacttatggtttacaaaagttacaa |
1249173 |
T |
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| Q |
206 |
tgtcgatagaagnnnnnnnnn--caaagttatatgccaaaaccgcaacacaacagggaattaagtcaccatatatgatattcgaaaaacaagagtagcat |
303 |
Q |
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| T |
1249174 |
tgtcgatagaagaaaaaaaaaaacaaagttatatgccaaaaccgcaatacaacagggaattaagtcatcatatatgataatcgaaaaacaagagtagcat |
1249273 |
T |
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| Q |
304 |
ttcgaactttcaaccaccaaaaagagaggagttgtattttgtttactagttgctgcagcaattcttccttatttttgaagattttattatttatttcttt |
403 |
Q |
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| T |
1249274 |
ttcgaactttcaaccaccaaaaagagaggagttgtattttgtttactagttgctgcagcaattcttccttatttttgaagattttattatttatttcttt |
1249373 |
T |
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| Q |
404 |
ctaaataactcaaacatatgaaattaagcataaactttt-agaagatttactagtatgagcaaattgaagaaaatggtccgatagtcgatatggatcaac |
502 |
Q |
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| T |
1249374 |
ctaaataactcaaacatatgaaattaagcataaacttttaagaagatttactagtatgagcaaattgaagaaaatggtccgatagtcgatatggattaac |
1249473 |
T |
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| Q |
503 |
cgcggtaatgtcaatc |
518 |
Q |
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|||||||||||||||| |
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| T |
1249474 |
cgcggtaatgtcaatc |
1249489 |
T |
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