View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_19 (Length: 515)
Name: NF17452_low_19
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 18 - 505
Target Start/End: Complemental strand, 51053667 - 51053199
Alignment:
| Q |
18 |
gttcgatctaacaatttcggcattttgcgacttgtggattgtgttgcacttaatttaatgataagaatgttagtgtatgaaaagcatgttgacagtgata |
117 |
Q |
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| T |
51053667 |
gttcgacctaacaatttcggcattttgcgacttgtggattgtgttgcacttaatttaa------------------atgaaaagcatgttgacagcgata |
51053586 |
T |
|
| Q |
118 |
tannnnnnnnaaatgaagaaatttaattaactacacgttgtgttggtgttgatgcatatcgaacactggacacactcttcatatgaagtgttannnnnnn |
217 |
Q |
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| T |
51053585 |
tattttttttaaatgaagaaatttaattaactacactttgtgttggtgttgatgcatatcgaacactggacacactcttcatatgaagtgttatttttat |
51053486 |
T |
|
| Q |
218 |
nngttgacaaatcgtatgaagttttaatgctacataatttagaacgtagaattggatgtattagggatgtatgtttggaattttagtataagaaatataa |
317 |
Q |
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| T |
51053485 |
tt-ttgacaaatcgtatgaagttttaatgctacataatttagaacgtagaattggatgtattagggatgtatgtttggaattttagtataagaaatataa |
51053387 |
T |
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| Q |
318 |
ggcttatgctggaagttagcttctatttgaagacaagggatcttgtctataatttgattagatgtgcgaaaagcatgattcttggagaacttttaaagat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51053386 |
ggcttatgctggaagttagcttctatttgaagacaagggatcttgtctataatttgattagatgtgcgaaaagcatgattcttggagaacttttaaagat |
51053287 |
T |
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| Q |
418 |
atggatggtcacataagtactaatgtgaagagcatcagggatgaaagtctggatttcctaccaatttaagtcaataattcatctcact |
505 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51053286 |
atggatggccacataagtactaatgtgaagagcatcagggatgaaagtctggatttcctaccaatttaagtcaataattcatttcact |
51053199 |
T |
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