View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_26 (Length: 451)

Name: NF17452_low_26
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_26
NF17452_low_26
[»] chr3 (14 HSPs)
chr3 (24-341)||(23651202-23651516)
chr3 (357-439)||(23651059-23651141)
chr3 (379-434)||(31435495-31435550)
chr3 (368-434)||(40412302-40412368)
chr3 (379-429)||(42823984-42824034)
chr3 (385-434)||(20221486-20221535)
chr3 (357-434)||(27471528-27471605)
chr3 (357-434)||(50381738-50381815)
chr3 (357-434)||(50688864-50688941)
chr3 (400-434)||(16788107-16788141)
chr3 (357-429)||(24559412-24559485)
chr3 (383-420)||(44880616-44880653)
chr3 (357-434)||(47864660-47864737)
chr3 (357-413)||(45583477-45583533)
[»] chr8 (13 HSPs)
chr8 (382-434)||(17855698-17855750)
chr8 (360-413)||(29930207-29930260)
chr8 (357-429)||(3728227-3728299)
chr8 (357-421)||(26261261-26261325)
chr8 (365-429)||(35253823-35253886)
chr8 (382-429)||(1588816-1588863)
chr8 (379-421)||(8698559-8698601)
chr8 (368-414)||(36593229-36593275)
chr8 (357-434)||(10201286-10201363)
chr8 (368-429)||(10310317-10310378)
chr8 (385-434)||(34037942-34037991)
chr8 (70-126)||(37163849-37163905)
chr8 (385-429)||(39172212-39172256)
[»] chr4 (9 HSPs)
chr4 (379-414)||(44975954-44975989)
chr4 (357-434)||(32037591-32037668)
chr4 (379-414)||(47416514-47416549)
chr4 (357-434)||(22525413-22525489)
chr4 (368-417)||(37914700-37914749)
chr4 (357-434)||(38690690-38690767)
chr4 (357-434)||(51974771-51974848)
chr4 (357-429)||(43362167-43362239)
chr4 (382-434)||(56555597-56555649)
[»] chr5 (5 HSPs)
chr5 (368-414)||(33599944-33599990)
chr5 (383-429)||(7988898-7988945)
chr5 (382-429)||(20735174-20735221)
chr5 (357-434)||(34729496-34729572)
chr5 (386-434)||(15680895-15680943)
[»] chr2 (2 HSPs)
chr2 (382-436)||(20435830-20435884)
chr2 (382-429)||(43871002-43871049)
[»] chr1 (8 HSPs)
chr1 (357-434)||(19424070-19424147)
chr1 (385-429)||(47763384-47763428)
chr1 (382-434)||(50065059-50065111)
chr1 (357-434)||(22779247-22779324)
chr1 (385-434)||(23368726-23368775)
chr1 (381-429)||(2350374-2350422)
chr1 (357-433)||(7006616-7006692)
chr1 (379-419)||(10629412-10629452)
[»] chr7 (7 HSPs)
chr7 (382-414)||(21461666-21461698)
chr7 (379-434)||(14707338-14707393)
chr7 (384-439)||(40011763-40011818)
chr7 (368-413)||(38025376-38025421)
chr7 (357-434)||(47324477-47324554)
chr7 (69-129)||(1788090-1788150)
chr7 (382-434)||(5228119-5228171)
[»] chr6 (6 HSPs)
chr6 (361-421)||(11301398-11301458)
chr6 (379-429)||(32344685-32344735)
chr6 (359-408)||(9981534-9981583)
chr6 (357-434)||(24794889-24794966)
chr6 (380-421)||(29430310-29430351)
chr6 (381-429)||(33628940-33628988)
[»] scaffold0809 (1 HSPs)
scaffold0809 (382-429)||(4805-4852)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 24 - 341
Target Start/End: Complemental strand, 23651516 - 23651202
Alignment:
Q  24 cactcaaattatatatattcgtttattatcatgtttttatcttacttttacatgcatttcttagtttagtagcaaaaaatctaaaacaaccatacttagc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  23651516 cactcaaattatatatattcgtttattatcatgtttttatcttacttttacatgcatttcttagtctagtag-aaaaaatctaaaacaaccatacttagc 23651418  T
Q  124 actctattgtacaagttaaggaaacacaactgtgagatagagtttcttccacaattttattcacttgaaagattccaaagtattaccaagagaattcaat 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23651417 actctattgtacaagttaaggaaacacaactgtgagatagagtttcttccacaatattattcacttgaaagattccaaagtattaccaagagaattcaat 23651318  T
Q  224 agtttacccattttcatctaatttgcctacactagtggaggcgaatccaagtacaattattgnnnnnnnnnngaggaaaagtacaattattgtattcata 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  23651317 agtttacccattttcatctaatttgcctacactagtggaggcgaatccaagtacaattattg--tattttttgaggaaaagtacaattattgtattcata 23651220  T
Q  324 tacaataccgaatttatt 341  Q
    |||||| |||||||||||    
T  23651219 tacaattccgaatttatt 23651202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 357 - 439
Target Start/End: Complemental strand, 23651141 - 23651059
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatctatccct 439  Q
    ||||||||||||||||| |||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  23651141 ataatgcataatatatatagaagtcgaggttcgaacctcggacatcccacttattcacatttaaagtgaatttatctagccct 23651059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 434
Target Start/End: Complemental strand, 31435550 - 31435495
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||||||||| |||||||||||||||||||||  ||||| |||||||| ||||    
T  31435550 gttggggttcgaacctcggacatcccacttattcatctttaaggtgaatttctcta 31435495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 40412302 - 40412368
Alignment:
Q  368 tatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||| |||| || ||||||||||  | ||||||||||||||||||| |||||||||||||| ||||    
T  40412302 tatatgcagaggtcggggttcgaactttggacatcccacttattcacctttaaagtgaatttctcta 40412368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 42824034 - 42823984
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||||||||||||||| || |||||||||| || |||||||||||    
T  42824034 gttggggttcgaatctcggacaccctacttattcactttaaaagtgaattt 42823984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 385 - 434
Target Start/End: Original strand, 20221486 - 20221535
Alignment:
Q  385 gttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||| ||||    
T  20221486 gttcgaacctcggacatcccacttattcacttttaaaatgaatttttcta 20221535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 27471528 - 27471605
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||||||| |||||  ||||||||||||| | |||||| ||||||||||||  ||||| || ||||| ||||    
T  27471528 ataatgcataatatgtacaggggttggggttcgaaccccggacaccccacttattcatctttaaggtaaatttctcta 27471605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 50381738 - 50381815
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||| ||||||| |||  || |||||||||||| |||||| ||||||||||||  ||||| |||||||| ||||    
T  50381738 ataatgcacaatatatgcaggggtcggggttcgaatcccggacaccccacttattcatctttaaggtgaatttctcta 50381815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 50688864 - 50688941
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||||||  | ||| ||| |||||||||||  |||| ||||||||||||||  |||||||||||||| ||||    
T  50688864 ataatgcataatacgtgcaggagtcggggttcgaattccggatatcccacttattcatctttaaagtgaatttctcta 50688941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 400 - 434
Target Start/End: Complemental strand, 16788141 - 16788107
Alignment:
Q  400 atcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||||||||||||||| ||||||||||||    
T  16788141 atcccacttattcacatttaaattgaatttatcta 16788107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 429
Target Start/End: Original strand, 24559412 - 24559485
Alignment:
Q  357 ataatgcataat-atatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||||| |||| |||  || |||||||||| | |||||| ||||||||||||| || |||||||||||    
T  24559412 ataatgcataattatatgcaggggtcggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 24559485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 44880616 - 44880653
Alignment:
Q  383 gggttcgaatctcggacatcccacttattcacatttaa 420  Q
    |||||||||||||||||||||||||| | |||||||||    
T  44880616 gggttcgaatctcggacatcccacttctccacatttaa 44880653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 47864660 - 47864737
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||| ||||| | |||  ||||||||||||| | |||||| ||||||||||||  ||||| |||||||| ||||    
T  47864660 ataatgcacaatatgtgcaggggttggggttcgaaccccggacaccccacttattcatctttaaggtgaatttctcta 47864737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 45583533 - 45583477
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattca 413  Q
    ||||||||||||||||| ||  ||| ||||||||||| | |||| ||||||||||||    
T  45583533 ataatgcataatatatataggggttagggttcgaatcccagacaccccacttattca 45583477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 17855698 - 17855750
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| | |||||| |||||||||||||||||||||||||||| ||||    
T  17855698 ggggttcgaaccccggacaccccacttattcacatttaaagtgaatttttcta 17855750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 29930260 - 29930207
Alignment:
Q  360 atgcataatatatacagaagttggggttcgaatctcggacatcccacttattca 413  Q
    ||||||||||||| |||||||| ||||||||||| |||| || |||||||||||    
T  29930260 atgcataatatatgcagaagttagggttcgaatcccggatattccacttattca 29930207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 429
Target Start/End: Complemental strand, 3728299 - 3728227
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||||||||| | || || | ||||| ||||||||||| | ||||||||||| ||||| ||||||||    
T  3728299 ataatgcataatatatgcggaggtcgaggttcaaatctcggacacctcacttattcacctttaaggtgaattt 3728227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 421
Target Start/End: Complemental strand, 26261325 - 26261261
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaa 421  Q
    |||||| |||||||||| ||| ||||||||||||| ||| || ||||||||| ||||| ||||||    
T  26261325 ataatgtataatatatatagatgttggggttcgaacctcagatatcccacttcttcacgtttaaa 26261261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 365 - 429
Target Start/End: Complemental strand, 35253886 - 35253823
Alignment:
Q  365 taatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||| |||  ||||||||||||||| |||||| ||||||||||||| || |||||||||||    
T  35253886 taatatatgcaggggttggggttcgaatc-cggacaccccacttattcactttaaaagtgaattt 35253823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 1588816 - 1588863
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||| |||||||| ||||||||||||| || |||||||||||    
T  1588816 ggggttcgaacctcggacaccccacttattcactttaaaagtgaattt 1588863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 421
Target Start/End: Complemental strand, 8698601 - 8698559
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcacatttaaa 421  Q
    ||||||||||||||| |||||| ||||||| ||||||||||||    
T  8698601 gttggggttcgaatcccggacaccccacttcttcacatttaaa 8698559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 36593229 - 36593275
Alignment:
Q  368 tatatacagaagttggggttcgaatctcggacatcccacttattcac 414  Q
    |||||||||| ||||||||||||||||  ||||||| ||||||||||    
T  36593229 tatatacagaggttggggttcgaatcttagacatccaacttattcac 36593275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 10201286 - 10201363
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||||||||||||  ||  || |||||||||| | |||||| | || |||||||| |||||||||||||| ||||    
T  10201286 ataatgcataatatatgtaggggtcggggttcgaaccccggacacctcatttattcacctttaaagtgaatttctcta 10201363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 429
Target Start/End: Original strand, 10310317 - 10310378
Alignment:
Q  368 tatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||| || || ||| ||||| |||||| ||||||||||||| || |||||||||||    
T  10310317 tatatacagaggtcggagtttgaatcccggacaccccacttattcactttaaaagtgaattt 10310378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 34037991 - 34037942
Alignment:
Q  385 gttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||||| | |||||||||||||||||  |||||||||||||| ||||    
T  34037991 gttcgaatcccagacatcccacttattcatctttaaagtgaatttttcta 34037942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 126
Target Start/End: Original strand, 37163849 - 37163905
Alignment:
Q  70 tttacatgcatttcttagtttagtagcaaaaaatctaaaacaaccatacttagcact 126  Q
    |||||||| ||||||||||  ||||||||||| || ||||||| |||||||| ||||    
T  37163849 tttacatgtatttcttagtcgagtagcaaaaactcaaaaacaatcatacttaacact 37163905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 39172256 - 39172212
Alignment:
Q  385 gttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    ||||||||| |||||| |||| |||||||| ||||||||||||||    
T  39172256 gttcgaatcccggacaccccatttattcacctttaaagtgaattt 39172212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 44975954 - 44975989
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcac 414  Q
    ||||||||||||||||||||||||||||||||||||    
T  44975954 gttggggttcgaatctcggacatcccacttattcac 44975989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 32037591 - 32037668
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| ||||| |||  || ||||||| ||||  ||| |||||| ||||||||||||||||||||||| ||||    
T  32037591 ataatgcatattatatgcaggggtcggggttcaaatcctggatatcccatttattcacatttaaagtgaatttctcta 32037668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 414
Target Start/End: Original strand, 47416514 - 47416549
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcac 414  Q
    |||||||||||||||||||||| |||||||||||||    
T  47416514 gttggggttcgaatctcggacaccccacttattcac 47416549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 22525413 - 22525489
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| ||||| ||||||  ||| |||||||| |||||| ||||||||||||| |||||  ||||||| ||||    
T  22525413 ataatgcatattatatgcagaagccggg-ttcgaatcccggacaccccacttattcacctttaagatgaatttctcta 22525489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 417
Target Start/End: Complemental strand, 37914749 - 37914700
Alignment:
Q  368 tatatacagaagttggggttcgaatctcggacatcccacttattcacatt 417  Q
    ||||||||||||||||||||  ||||||| |||  |||||||||||||||    
T  37914749 tatatacagaagttggggtttaaatctcgaacactccacttattcacatt 37914700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 38690690 - 38690767
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| ||||| |||  || |||||||||| | |||||| ||||||||||| | ||||| |||||||| ||||    
T  38690690 ataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattctcctttaaggtgaatttctcta 38690767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 51974771 - 51974848
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||| ||||| | |||  || ||| |||||| ||||||||||||||||||| |  ||||| |||||||||||||    
T  51974771 ataatgcacaatatgtgcaggggtcgggattcgaacctcggacatcccacttatttatctttaaggtgaatttatcta 51974848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 429
Target Start/End: Complemental strand, 43362239 - 43362167
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||| ||||||| |||  || |||||||||| | |||||| ||||||||||||  ||||| ||||||||    
T  43362239 ataatgcacaatatattcaggggtcggggttcgaaccccggacaccccacttattcatctttaaggtgaattt 43362167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 56555597 - 56555649
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| |||| ||| ||||||||||||| ||||| |||||||| ||||    
T  56555597 ggggttcgaacctcgaacaccccacttattcacctttaaggtgaatttctcta 56555649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 368 - 414
Target Start/End: Original strand, 33599944 - 33599990
Alignment:
Q  368 tatatacagaagttggggttcgaatctcggacatcccacttattcac 414  Q
    |||||| || |||||||||||||||| ||||||||||||||||||||    
T  33599944 tatatataggagttggggttcgaatcccggacatcccacttattcac 33599990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 383 - 429
Target Start/End: Original strand, 7988898 - 7988945
Alignment:
Q  383 gggttcgaatctcggacatcccacttattcacatt-taaagtgaattt 429  Q
    ||||||||| |||||||||||||||||||||| || ||||||||||||    
T  7988898 gggttcgaacctcggacatcccacttattcactttataaagtgaattt 7988945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 20735221 - 20735174
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||||| |||||| ||||||||||||| || |||||||||||    
T  20735221 ggggttcgaatcccggacaccccacttattcactttaaaagtgaattt 20735174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 34729496 - 34729572
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| ||||| |||  || |||||||||| | |||||| ||||||||||||| ||||| |||||||| ||||    
T  34729496 ataatgcatattatatgcaggggtcggggttcgaacc-cggacaccccacttattcacctttaaggtgaatttctcta 34729572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 434
Target Start/End: Complemental strand, 15680943 - 15680895
Alignment:
Q  386 ttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||| |||||||| ||||||||||||| ||||| |||||||| ||||    
T  15680943 ttcgaacctcggacaccccacttattcacctttaaggtgaatttctcta 15680895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 436
Target Start/End: Original strand, 20435830 - 20435884
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatctatc 436  Q
    |||||||||| |||||||||||||||||||||  ||||| |||||||| ||||||    
T  20435830 ggggttcgaacctcggacatcccacttattcatctttaaggtgaatttctctatc 20435884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Original strand, 43871002 - 43871049
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||||| |||||| ||||||||||||| || |||||||||||    
T  43871002 ggggttcgaatcccggacaccccacttattcactttaaaagtgaattt 43871049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 19424070 - 19424147
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| ||||| |||  || |||||||||| | |||||| ||||||||||||| ||||| |||||||| ||||    
T  19424070 ataatgcatattatatgcaggggtcggggttcgaaccccggacaccccacttattcacctttaaggtgaatttctcta 19424147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 47763428 - 47763384
Alignment:
Q  385 gttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    ||||||| |||||||||||||||||||||| || |||||||||||    
T  47763428 gttcgaacctcggacatcccacttattcactttaaaagtgaattt 47763384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 50065059 - 50065111
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||||||||||||||| ||||||||||||  ||||| |||||||| ||||    
T  50065059 ggggttcgaatctcggacaccccacttattcatctttaaggtgaatttctcta 50065111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Original strand, 22779247 - 22779324
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||| | ||||||| ||| |||||||||| | |  ||| ||||||||||||| |||||| ||||||| ||||    
T  22779247 ataatgcatattttatacaggagtcggggttcgaaccccaaacaccccacttattcacctttaaaatgaatttctcta 22779324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 434
Target Start/End: Complemental strand, 23368775 - 23368726
Alignment:
Q  385 gttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||| | |||||| |||||||||||||||| || |||||||||||||    
T  23368775 gttcgaaccccggacaccccacttattcacattaaaggtgaatttatcta 23368726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 2350422 - 2350374
Alignment:
Q  381 tggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    ||||||||||| | || ||| ||||||||||||| ||||||||||||||    
T  2350422 tggggttcgaaccccgaacaccccacttattcacctttaaagtgaattt 2350374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 433
Target Start/End: Original strand, 7006616 - 7006692
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatct 433  Q
    |||||||||| ||||| |||| | ||||||| ||| | || | | || | |||||||||||||||||||||||||||    
T  7006616 ataatgcatattatatgcagaggctggggtttgaaccccgaatacccaatttattcacatttaaagtgaatttatct 7006692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 10629412 - 10629452
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcacattta 419  Q
    ||||||||||||| ||||||||||||| |||||||| ||||    
T  10629412 gttggggttcgaacctcggacatcccatttattcaccttta 10629452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 414
Target Start/End: Complemental strand, 21461698 - 21461666
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcac 414  Q
    |||||||||||||||||||||||||||||||||    
T  21461698 ggggttcgaatctcggacatcccacttattcac 21461666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 434
Target Start/End: Original strand, 14707338 - 14707393
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||||||||| | |||||| ||||||||||||| |||| ||||||||| ||||    
T  14707338 gttggggttcgaaccccggacaccccacttattcacctttatagtgaatttctcta 14707393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 439
Target Start/End: Original strand, 40011763 - 40011818
Alignment:
Q  384 ggttcgaatctcggacatcccacttattcacatttaaagtgaatttatctatccct 439  Q
    |||||||| | || |||||||||||||| || |||||||||||||| |||||||||    
T  40011763 ggttcgaaccccgaacatcccacttatttacttttaaagtgaatttctctatccct 40011818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 413
Target Start/End: Original strand, 38025376 - 38025421
Alignment:
Q  368 tatatacagaagttggggttcgaatctcggacatcccacttattca 413  Q
    ||||| ||| |||||||||||||| ||||||||| |||||||||||    
T  38025376 tatatgcaggagttggggttcgaacctcggacattccacttattca 38025421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 47324554 - 47324477
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||||||||||| ||  || || |||||||| ||| |||| |||||||| |||| ||||| |||||||| ||||    
T  47324554 ataatgcataatatatgcatgagctgaggttcgaacctctgacaccccacttaatcacctttaaggtgaatttctcta 47324477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 1788150 - 1788090
Alignment:
Q  69 ttttacatgcatttcttagtttagtagcaaaaaatctaaaacaaccatacttagcactcta 129  Q
    |||||| | ||||||||||| ||||||||||| ||  |||| ||||||||||| |||||||    
T  1788150 ttttacttccatttcttagtctagtagcaaaacattcaaaataaccatacttaacactcta 1788090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 434
Target Start/End: Original strand, 5228119 - 5228171
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    ||||||||||||  ||||| ||||||||||||| ||||| |||||||| ||||    
T  5228119 ggggttcgaatcctggacaccccacttattcacctttaaggtgaatttctcta 5228171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 11301398 - 11301458
Alignment:
Q  361 tgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaa 421  Q
    |||||| ||||| ||| |||||||||||||||||||||||  |||||| |||||| |||||    
T  11301398 tgcatattatatgcaggagttggggttcgaatctcggacactccacttcttcacaattaaa 11301458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 429
Target Start/End: Original strand, 32344685 - 32344735
Alignment:
Q  379 gttggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||||||   |||||| ||||||||||||| ||||||||||||||    
T  32344685 gttggggttcgaactccggacaccccacttattcacctttaaagtgaattt 32344735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 408
Target Start/End: Original strand, 9981534 - 9981583
Alignment:
Q  359 aatgcataatatatacagaagttggggttcgaatctcggacatcccactt 408  Q
    |||||||||||||| |||| ||||||||||||| || ||||| |||||||    
T  9981534 aatgcataatatatgcagaggttggggttcgaacctaggacaccccactt 9981583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 434
Target Start/End: Complemental strand, 24794966 - 24794889
Alignment:
Q  357 ataatgcataatatatacagaagttggggttcgaatctcggacatcccacttattcacatttaaagtgaatttatcta 434  Q
    |||||||| ||||| | |||  |||||| |||||| | ||||||||||||||||||| ||||||  ||||||| ||||    
T  24794966 ataatgcacaatatgtgcaggggttgggattcgaaccccggacatcccacttattcatatttaagatgaatttctcta 24794889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 421
Target Start/End: Complemental strand, 29430351 - 29430310
Alignment:
Q  380 ttggggttcgaatctcggacatcccacttattcacatttaaa 421  Q
    |||||||||||| |||||||| ||||||||||||| ||||||    
T  29430351 ttggggttcgaacctcggacaccccacttattcacctttaaa 29430310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 429
Target Start/End: Complemental strand, 33628988 - 33628940
Alignment:
Q  381 tggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    ||||||||||| | |||||| ||||||||||||| || |||||||||||    
T  33628988 tggggttcgaaccccggacaccccacttattcactttaaaagtgaattt 33628940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 429
Target Start/End: Complemental strand, 4852 - 4805
Alignment:
Q  382 ggggttcgaatctcggacatcccacttattcacatttaaagtgaattt 429  Q
    |||||||||||| |||||| ||||||||||||| || |||||||||||    
T  4852 ggggttcgaatcccggacaccccacttattcactttaaaagtgaattt 4805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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