View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_27 (Length: 447)
Name: NF17452_low_27
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 27310462 - 27310873
Alignment:
| Q |
20 |
aatttaactatagttcggtgtgacgggtataatcatcttcagaaataatagattgagattcatcatcttgagaagttttatcactggaattaaggcattc |
119 |
Q |
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| T |
27310462 |
aatttaactatagttcggtgtgacgggtataatcatcttcagaaataatagattgagattcatcatcttgagaagttttatcactggaattaaggcattc |
27310561 |
T |
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| Q |
120 |
agctgaaggatgaaccacaccatatccaaatccttgagctgaatgacaatatgtttcaactgtgccatcttgtttctccaaatcaacattgctaaggact |
219 |
Q |
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| T |
27310562 |
agctgaaggatgaaccacaccatatccaaatccttgagctgaatgacaatatgtttcaactgtgccatcttgtttctccaaatcaacattgctaaggact |
27310661 |
T |
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| Q |
220 |
aaattgctgcatggaacagtgtcactgcagtcaaatttaatggccttagcactatttgtagtcccacttacattttggtacattatctcacttatctcca |
319 |
Q |
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| T |
27310662 |
aaattgctgcatggaacagtgtcactgcagtcaaatttaatggccttagcactatttgtagtcccacttacattttggtacattatctcacttatctcca |
27310761 |
T |
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| Q |
320 |
atgctgatgactggaagaagnnnnnnncaaggggttgctatcagtnnnnnnnntgaaacattaaagaactcaaatctttaaaatgatgtgttggttttga |
419 |
Q |
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| T |
27310762 |
atgctgatgactggaagaagaaaaaaacaaggggttgctatcagtaaaaaaaatgaaacattaaagaactcaaatctttaaaatgatgtgttggttttga |
27310861 |
T |
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| Q |
420 |
gtacctggtttt |
431 |
Q |
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| T |
27310862 |
gtacctggtttt |
27310873 |
T |
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