View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_3 (Length: 734)
Name: NF17452_low_3
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 25 - 722
Target Start/End: Original strand, 41654132 - 41654816
Alignment:
| Q |
25 |
tttatttaattccatcactgtactgatgtgggtcaattctacacttggattggagcttgtatgtggagactctaattagctcattgtagtgcagtattta |
124 |
Q |
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| T |
41654132 |
tttatttaattccatcactgtactgatgtgggtcaattctacacttggattggagcttgtatgtgaagactctaattagctcattgtagtgcagtattta |
41654231 |
T |
|
| Q |
125 |
gacaattgggttatcaatgcattatttgctagaagacttttgcactgatactattaaatgatgacattatttgtcgagttagaaacatacaggagtgaaa |
224 |
Q |
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| T |
41654232 |
gagaattgggttatcaatgcattatttgctagaagacttttgcactgatactattaaatgatgacattatttgtcgagttagagccatacaggagtgaaa |
41654331 |
T |
|
| Q |
225 |
cttgaattttatgttcacattatcctttgctgtatttgttttgtacattacaaactcaaactcaaactcaaacaccgtcattttaatttaaacagtttcg |
324 |
Q |
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| T |
41654332 |
cttgaa--------------tatcctttgctgtatttgttttgtacattacaaactcaaactcaaactcaaacaccgtcattttaatttaaacagtttcg |
41654417 |
T |
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| Q |
325 |
tgtattgctt-----ttatgccattaaaatcttcttgacgtactattgttttatctgtaggtcggctcaatagaaggaagggttggagtacaccatcttg |
419 |
Q |
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| T |
41654418 |
tgtgttgcttttatattatgccattaaaa--------------tattgttttttctgtaggtcggctcaatagaaggaagggttggagtacaccatcttg |
41654503 |
T |
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| Q |
420 |
atgatgcattacaagacaagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactccttaaattttcatcctgtaataca--- |
516 |
Q |
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| T |
41654504 |
atgatgcattacaagacaagaattttacttttagatgccacagagaaaataatgacatatattcagtcaactcgttaaattttcatcctgtaaaatatca |
41654603 |
T |
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| Q |
517 |
--ctttataatatcaa--cattatttggaaagttgtggattcaatattcttttctagaagatcttatcg---atgtctttgtcttcaggtacatcacact |
609 |
Q |
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| T |
41654604 |
acattaattagttaaattttttatttggaaagttgtggattcaatattcttttctagaagatcttatcgatcatgtctttgtcttcaggtacatcacact |
41654703 |
T |
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| Q |
610 |
tttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggttcattatatgcttttcttatcgatgtcttctt |
709 |
Q |
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| T |
41654704 |
tttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggttcattatatgcttttcttatcgatgtcttctt |
41654803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 374 - 535
Target Start/End: Complemental strand, 28816200 - 28816039
Alignment:
| Q |
374 |
ctgtaggtcggctcaatagaaggaagggttggagtacaccatcttgatgatgcattacaagacaagaattttacttttagatgccacagagaaaataatg |
473 |
Q |
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| T |
28816200 |
ctgtaggttggctcaatagagggaagggttggagtacatcaccttgatgatgcacaacaaagcaagaattttacttttaaatgccacagagaaagtaacg |
28816101 |
T |
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| Q |
474 |
acatatattcagtcaactccttaaattttcatcctgtaatacactttataatatcaacatta |
535 |
Q |
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| T |
28816100 |
agatatattcggtcaactccttaaatttccatccggtaatgcactgtataatatcaaaatta |
28816039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 570 - 679
Target Start/End: Complemental strand, 28815982 - 28815873
Alignment:
| Q |
570 |
aagatcttatcgatgtctttgtcttcaggtacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagaga |
669 |
Q |
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| T |
28815982 |
aagatcttattgatttctttgatttcaggtacatcacacttttgcaactgctggatctgacggtgcttttaatttctgggataaggacagtaaacagaga |
28815883 |
T |
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| Q |
670 |
ctcaaggttc |
679 |
Q |
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| T |
28815882 |
ctcaaggttc |
28815873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 596 - 678
Target Start/End: Complemental strand, 1460565 - 1460483
Alignment:
| Q |
596 |
aggtacatcacacttttgcaactgctggatctgatggtgcttttcatttctgggataagaacagtaaacagagactcaaggtt |
678 |
Q |
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| T |
1460565 |
aggtacaccacacatttgctacggctggttctgatggtgcttttaatttttgggacaaggatagtaaacagaggcttaaggtt |
1460483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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