View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_30 (Length: 436)

Name: NF17452_low_30
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_30
NF17452_low_30
[»] chr3 (11 HSPs)
chr3 (12-421)||(26752584-26752993)
chr3 (167-350)||(26700265-26700448)
chr3 (61-372)||(26677070-26677381)
chr3 (61-372)||(26688709-26689020)
chr3 (195-372)||(26745690-26745867)
chr3 (195-342)||(26692995-26693142)
chr3 (195-372)||(26715416-26715592)
chr3 (185-318)||(26738709-26738842)
chr3 (252-318)||(26735454-26735520)
chr3 (53-129)||(26700486-26700562)
chr3 (254-323)||(47191918-47191987)
[»] chr7 (1 HSPs)
chr7 (254-330)||(21106707-21106783)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 12 - 421
Target Start/End: Complemental strand, 26752993 - 26752584
Alignment:
Q  12 tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26752993 tcatcacaccccccaagattccaacaatgtccccttcaccatcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatcctt 26752894  T
Q  112 caccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnnnnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattccttt 211  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  26752893 caccctctcagtagaaaaccctgaacaaaacatcatactctcccccaaaaaaaccttcacagcaggtttctaccctgtaggacaaaatgcttattccttt 26752794  T
Q  212 gccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacacttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  26752793 gccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaaccagttaatggaaaacgctcaacacttt 26752694  T
Q  312 cccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccactgaaaccacctcaacaaaaccacttgaactactattaca 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26752693 cccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccactgaaaccacctcaacaaaaccacttgaactactattaca 26752594  T
Q  412 ggaaacaggt 421  Q
     |||||||||    
T  26752593 tgaaacaggt 26752584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 167 - 350
Target Start/End: Complemental strand, 26700448 - 26700265
Alignment:
Q  167 ttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttgga 266  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||     
T  26700448 ttcacagcaggtttctaccctgttggagaaaatgcttattcctttgctatatggttcacccaaaaacacaaaaatctcaacaacgctaccgttgtttggg 26700349  T
Q  267 tggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcag 350  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||| || ||||| |||||||    
T  26700348 tggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttcttaaaaccggcaaccttgtattaaccgatgcag 26700265  T

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Target: chr3; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 61 - 372
Target Start/End: Complemental strand, 26677381 - 26677070
Alignment:
Q  61 cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnn 160  Q
    |||||| ||||||||||||||  ||||||||||||||||  | ||||| ||| |||||||||| ||||| || |||||| |||| ||| | || |||       
T  26677381 cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaa 26677282  T
Q  161 nnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattg 260  Q
        | || || ||||| || ||  | || ||  ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||  |||    
T  26677281 ggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgccatatggttcactcaaatacacaaaaatctaaacaacgctactgttg 26677182  T
Q  261 tttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccat 360  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||  || ||||     
T  26677181 tttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcaggacattccaa 26677082  T
Q  361 tgtttggtccac 372  Q
    ||| ||||||||    
T  26677081 tgtatggtccac 26677070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 61 - 372
Target Start/End: Original strand, 26688709 - 26689020
Alignment:
Q  61 cttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaaccctgaacaaaacatcatactttcccccnnn 160  Q
    |||||| ||||||||||||||  ||||||||||||||||  | ||||| ||| |||||||||| ||||| || |||||| |||| ||| | || |||       
T  26688709 cttcttcacttttctcatcttgttcttccattttcaacattcatcatcattctccctctcagtggaaaaacccgaacaagacattataatgtcacccaaa 26688808  T
Q  161 nnnnccttcacagcaggtttctaccctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattg 260  Q
        | || || ||||| || ||  | || ||  ||||||||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||  |||    
T  26688809 ggtacatttaccgcaggcttttattccgtcggtgaaaatgcttattcctttgccatatggttcactcaaatacacaaaaatctaaacaacgctactgttg 26688908  T
Q  261 tttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccat 360  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||  || ||||     
T  26688909 tttggatggcaaatcgtgaccaaccagttaacggaaaacgctcaacactttcccttctcaaaaccggcaacctcgtcttaaccgatgcaggacattccaa 26689008  T
Q  361 tgtttggtccac 372  Q
    ||| ||||||||    
T  26689009 tgtatggtccac 26689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 195 - 372
Target Start/End: Complemental strand, 26745867 - 26745690
Alignment:
Q  195 aaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacgg 294  Q
    ||||||||||||| || |||||||||||||| |||||||||||||| ||   |||  ||||| ||||||||||||| |||||||||||||||||||||||    
T  26745867 aaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctttccaatcctaccgttgtttggatggctaatcgtgaccaacctgttaacgg 26745768  T
Q  295 aaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccac 372  Q
    ||||||||||||||||||||||||||||||||| |||||| | ||||| || ||||  |||| ||  |||||||||||    
T  26745767 aaaacgctcaacactttcccttctcaaaactggcaacctcattttaaccgacgcaggacagttcaacgtttggtccac 26745690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 195 - 342
Target Start/End: Original strand, 26692995 - 26693142
Alignment:
Q  195 aaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacgg 294  Q
    ||||||||||||| || |||||||||||||| |||||||||||||| |||  |||| ||||| |||||||||||||||||||||||||||||||||||||    
T  26692995 aaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctcgccaacgctaccgttgtttggatggcaaatcgtgaccaacctgttaacgg 26693094  T
Q  295 aaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaac 342  Q
    |||| |||||| |||||||||||||||||| || ||||| || |||||    
T  26693095 aaaatgctcaagactttcccttctcaaaaccgggaaccttgtattaac 26693142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 195 - 372
Target Start/End: Complemental strand, 26715592 - 26715416
Alignment:
Q  195 aaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaacctgttaacgg 294  Q
    ||||||||||||| || |||||||||||||| |||||||||||||| |||| |||  ||||| |||||||||||||||||||||||||||| ||||||||    
T  26715592 aaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctcaccaatgctaccgttgtttggatggcaaatcgtgaccaaccagttaacgg 26715493  T
Q  295 aaaacgctcaacactttcccttctcaaaactggaaacctcgtcttaacagatgcagctcagtccattgtttggtccac 372  Q
     |||||||| |||||||||||||| || || || |||||| | ||||| || ||||  ||||  | ||||||||||||    
T  26715492 -aaacgctcgacactttcccttcttaataccggcaacctcattttaaccgacgcaggacagtttaatgtttggtccac 26715416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 185 - 318
Target Start/End: Complemental strand, 26738842 - 26738709
Alignment:
Q  185 cctgtaggacaaaatgcttattcctttgccatatggttcacccaaaaacacaaaaatctcaacaacactaccattgtttggatggcaaatcgtgaccaac 284  Q
    ||||||||  ||||||||||||| || |||||||||||||| |||||||||||||| |||| |||  ||||| |||||||||||||||||||||| || |    
T  26738842 cctgtaggcgaaaatgcttattcattcgccatatggttcactcaaaaacacaaaaacctcaccaatgctaccgttgtttggatggcaaatcgtgaacagc 26738743  T
Q  285 ctgttaacggaaaacgctcaacactttcccttct 318  Q
    | || |||||||||||||| ||||||||||||||    
T  26738742 cagtaaacggaaaacgctcgacactttcccttct 26738709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 26735520 - 26735454
Alignment:
Q  252 ctaccattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttct 318  Q
    ||||| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||    
T  26735520 ctaccgttgtttggatggcaaatcgtgatcaaccagttaatggaaaacgctcaacactttcccttct 26735454  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 26700562 - 26700486
Alignment:
Q  53 tcaccaatcttcttaacttttctcatctttctcttccattttcaacacacctcatccttcaccctctcagtagaaaa 129  Q
    ||||||||||| || ||| |||||||||| ||||||| |||||| ||| | ||||| ||| |||||||||| |||||    
T  26700562 tcaccaatcttgttcactattctcatcttcctcttccgttttcagcactcatcatcattctccctctcagttgaaaa 26700486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 47191918 - 47191987
Alignment:
Q  254 accattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaa 323  Q
    ||||||||||||||||| ||  | ||||||||||||||||| |||| ||||| ||| || ||| ||||||    
T  47191918 accattgtttggatggctaacagagaccaacctgttaacggcaaacactcaaaactctcacttttcaaaa 47191987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 330
Target Start/End: Original strand, 21106707 - 21106783
Alignment:
Q  254 accattgtttggatggcaaatcgtgaccaacctgttaacggaaaacgctcaacactttcccttctcaaaactggaaa 330  Q
    |||||| |||||||||||||||| |||||||| || || |||||||| || | |||| ||||| | || ||||||||    
T  21106707 accattatttggatggcaaatcgcgaccaacccgtgaatggaaaacgatccaaacttacccttttaaacactggaaa 21106783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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