View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_31 (Length: 430)
Name: NF17452_low_31
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_31 |
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| [»] scaffold0196 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 16344699 - 16344455
Alignment:
| Q |
1 |
caacttggtgatggtcataaaattaatttttggacagatgattggtgtggatcccctttggttgacttgcttcatattccccataatctgcacaataatc |
100 |
Q |
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| T |
16344699 |
caacttagtgatggtcataaaattaatttttggacagatgattggtgtggatcccctttggttgacttgcttcatatttcccataatctgcacaat---c |
16344603 |
T |
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| Q |
101 |
tgcagtccaaagtgaatgatttcatccaattctcaatggcatgttccaatggagttgcagctagcctatccatccttaattcaccatattaataaaatca |
200 |
Q |
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| T |
16344602 |
tgcagtccaaagtgaatgatttcatccaattctcaatggcatgttccaatggagttgcagctagcctatccatccttaatgcaccatattaataaaat-- |
16344505 |
T |
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| Q |
201 |
ctcactattccttggaggcataaagctgataagttcatatggaaagacaccc |
252 |
Q |
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| T |
16344504 |
--cactattccttggaggcataaagctgataagttcatatggaaagacaccc |
16344455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 287 - 412
Target Start/End: Complemental strand, 16344454 - 16344329
Alignment:
| Q |
287 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
386 |
Q |
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| T |
16344454 |
cttccactgtactcataatagcaagaaagattggtccaagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcat |
16344355 |
T |
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| Q |
387 |
aacaaaatgccaacatatgacaacct |
412 |
Q |
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| T |
16344354 |
aacaaaatgccaacatatgacaacct |
16344329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0196 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0196
Description:
Target: scaffold0196; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 400
Target Start/End: Original strand, 29910 - 29986
Alignment:
| Q |
324 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgattcataacaaaatgccaac |
400 |
Q |
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| T |
29910 |
aagatcatttggaactcaacaattcccccatctaaatcttttcatgtttggagaatgattcacaacaagatgccaac |
29986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 12043762 - 12043624
Alignment:
| Q |
4 |
cttggtgatggtcataaaattaatttttggacagatgattggtgtggatcccctttggttgacttgcttcatattccccataatctgcacaataatctgc |
103 |
Q |
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| T |
12043762 |
cttggtgatggccaaaagatcaacttctggactcatgattggtgtggaacccccttg-ttgatttgtttcatattccccataacctgcatcataatcttc |
12043664 |
T |
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| Q |
104 |
agtccaaagtgaatgatttcatc--caattctcaatggca |
141 |
Q |
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| T |
12043663 |
tctctacagtgaatgactacatcatcaattctcaatggca |
12043624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 12043445 - 12043387
Alignment:
| Q |
324 |
aagataatctggaactcagcaattccaccctcaaaatcttttcatgtttggagaatgat |
382 |
Q |
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| T |
12043445 |
aagataatatggaactcaacaattcttccatcaaaatcttttcatatgtggagaatgat |
12043387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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