View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_35 (Length: 410)
Name: NF17452_low_35
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Original strand, 1133244 - 1133631
Alignment:
| Q |
18 |
atgtaatagagacagagattgtcacatctcatgtgtcccacctgaacttccgaagtgcattgcacatatgtgtttctgttttaacagttaagctgacaaa |
117 |
Q |
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| T |
1133244 |
atgtaatagagacagagattgtcacatctcatgtgtcccacctgaacttccgaagtgcattgcacatatgtgtttctgttttaacagttaagctgacaaa |
1133343 |
T |
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| Q |
118 |
taatgaaatacttttaaatttttaattttatttcaacatgttgttagttttatgattaattgcacatttcagttt--ctctctaacagttaaatttcttt |
215 |
Q |
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| T |
1133344 |
taatgaaatacttttaaatttttaattttatttcaacatgttgttagttttatgatttattgcacatttcagtttttctctctaacagttaaatttcttt |
1133443 |
T |
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| Q |
216 |
gatagggttgtaatctttgtttgcttttacaagacacatggaggataaaatgtcactgtataaatgaattgcaacaaattaagatgtgattatgtaaaat |
315 |
Q |
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| T |
1133444 |
gatagggttgtaatctttgtttgcttttacaagacacatggaggataaaatgtcactgcataaatgaattgcaacaaattaagatgtgattatgtaaaat |
1133543 |
T |
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| Q |
316 |
tattatgaaataaagacaacatggttatcatgtaattatatgcatacaattataagcatacatgtatcttttcaatacaattcttttc |
403 |
Q |
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| T |
1133544 |
tattatgaaataaagacaacatggttatcatgtaattatatgcatacaattataagcatacatgtatcttttcaatacaattcttttc |
1133631 |
T |
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