View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_38 (Length: 400)

Name: NF17452_low_38
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_38
NF17452_low_38
[»] chr6 (3 HSPs)
chr6 (20-400)||(33838825-33839205)
chr6 (171-400)||(33842775-33843005)
chr6 (23-145)||(33842996-33843118)
[»] chr4 (4 HSPs)
chr4 (20-127)||(36627023-36627130)
chr4 (30-84)||(55965692-55965746)
chr4 (20-68)||(36590357-36590405)
chr4 (20-92)||(36910721-36910793)
[»] chr8 (1 HSPs)
chr8 (20-84)||(35336928-35336992)
[»] chr5 (6 HSPs)
chr5 (21-62)||(7975762-7975803)
chr5 (20-84)||(19657192-19657256)
chr5 (20-84)||(19674036-19674100)
chr5 (20-62)||(7895944-7895986)
chr5 (20-62)||(28092140-28092182)
chr5 (20-56)||(38141047-38141083)
[»] chr3 (1 HSPs)
chr3 (20-68)||(7119981-7120029)


Alignment Details
Target: chr6 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 33839205 - 33838825
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcacatcagattattagtgctcgatgaagagtttatctaa 119  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33839205 ccatacctgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcacatcagattattagtgctcgatgaagagtttatctaa 33839106  T
Q  120 cgtaatgtttgctattctttatagttgatcatggattatcttgattatttgctatatagtttatttaagatttgtttagtcaaatgaccatacattgatg 219  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33839105 cgtaatgtttgctattctttatagttgatcatggattatcttaattatttgctatatagtttattttagatttgtttagtcaaatgaccatacattgatg 33839006  T
Q  220 agcagaactgttgattaataataggaagcaaagtaaacttcaaaccgtaaagaaggtcgtgatttagtggcttttgttttcataatgggagtttttgggc 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| |||    
T  33839005 agcagaactgttgattaataataggaagcaaagtaaacttcaaaccgtaaagaaggccgtgatttagtggtttttgttttcatattgggagttttttggc 33838906  T
Q  320 tgcatgttcattttgtttgcgagtcattctgatccaatttaaaacgaagcgcaataaaggcactattgttttagttaattt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33838905 tgcatgttcattttgtttgcgagtcattctgatccaatttaaaacgaagcacaataaaggcactattgttttagttaattt 33838825  T

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Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 171 - 400
Target Start/End: Complemental strand, 33843005 - 33842775
Alignment:
Q  171 ctatatagtttatttaagatttgtttagtcaaatgaccatacattgatgagcagaactgttgattaataataggaagcaaagtaaacttcaaaccgtaaa 270  Q
    |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  33843005 ctatatagtttatttgtgatttgtttagtcaaatggccatacattgatgagcagaactgttgattaataataggtagcaaagtaaacttcaaaccgtaaa 33842906  T
Q  271 gaaggtcgtgatttagtggcttttgttttcataatgggagtttttgggctgcatgttcattttgtttgcgagtcattctgatccaa-tttaaaacgaagc 369  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||    
T  33842905 gaaggccgtgatttagtggcttttgttttcatattgggagtttttgggctgcatgttctttttgtttgcgagtcattctgatccaattttaaaacaaagc 33842806  T
Q  370 gcaataaaggcactattgttttagttaattt 400  Q
    |||||||||||||||||||||||||||||||    
T  33842805 gcaataaaggcactattgttttagttaattt 33842775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 33843118 - 33842996
Alignment:
Q  23 tacccgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcacatcagattattagtgctcgatgaagagtttatctaacgt 122  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  33843118 tacctgatggaatagtggacttcttgcttcaaaactcaccgtctgccaaagttaacatcacatcagattattagcgctcgatgaagagtttatctaacgt 33843019  T
Q  123 aatgtttgctattctttatagtt 145  Q
    ||||| || |||||| |||||||    
T  33843018 aatgtatgttattctatatagtt 33842996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 36627130 - 36627023
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcacatcagattattagtgctcgatgaagagtttatctaa 119  Q
    ||||||| |||||||||||  ||||||||||||||||||| ||||| || |||||  | |||||| ||  ||||||||||| | |||||||| |||| ||    
T  36627130 ccatacctgatggaatagtcaacttcttgcttcaaaactcgccgtctgcaaaagttgatatcacaacaatttattagtgcttgttgaagagtctatccaa 36627031  T
Q  120 cgtaatgt 127  Q
    | ||||||    
T  36627030 cctaatgt 36627023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 30 - 84
Target Start/End: Complemental strand, 55965746 - 55965692
Alignment:
Q  30 tggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcaca 84  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||  ||||||||    
T  55965746 tggaatagtggacttcttacttcaaaactcaccgtcggccaaagttgacatcaca 55965692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 36590405 - 36590357
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagc 68  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  36590405 ccatacctgatggaatagtggactttttgattcaaaactcaccgtcagc 36590357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 36910721 - 36910793
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcacatcagatta 92  Q
    ||||||| ||||||||||| ||||||||||  |||||||| || |||||  |||| ||||||||| |||||||    
T  36910721 ccatacctgatggaatagttgacttcttgcgacaaaactcgccctcagcggaagttaacatcacaacagatta 36910793  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 35336928 - 35336992
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcaca 84  Q
    ||||||| ||||||||||| ||||||||||  |||||||||||||| || ||||| |||||||||    
T  35336928 ccatacctgatggaatagttgacttcttgcaacaaaactcaccgtcggcgaaagttaacatcaca 35336992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 7975803 - 7975762
Alignment:
Q  21 catacccgatggaatagtggacttcttgcttcaaaactcacc 62  Q
    |||||| ||||||||||||||||||||||||||||| |||||    
T  7975803 catacctgatggaatagtggacttcttgcttcaaaattcacc 7975762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 19657256 - 19657192
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcaca 84  Q
    ||||||| ||||||||||| | |||||||||||||||||| ||||| || |||||  ||||||||    
T  19657256 ccataccagatggaatagttgccttcttgcttcaaaactctccgtccgcaaaagttcacatcaca 19657192  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 19674100 - 19674036
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagccaaagtcaacatcaca 84  Q
    ||||||| ||||||||||| | |||||||||||||||||| ||||| || |||||  ||||||||    
T  19674100 ccataccagatggaatagttgccttcttgcttcaaaactctccgtccgcaaaagttcacatcaca 19674036  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 7895944 - 7895986
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcacc 62  Q
    ||||||| |||||||||||||| |||||||||||||| |||||    
T  7895944 ccatacctgatggaatagtggatttcttgcttcaaaattcacc 7895986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 28092140 - 28092182
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcacc 62  Q
    ||||||| ||||||||||||||||| ||| |||||||||||||    
T  28092140 ccatacctgatggaatagtggactttttgattcaaaactcacc 28092182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 38141083 - 38141047
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaa 56  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  38141083 ccatacctgatggaatagtggacttcttgattcaaaa 38141047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 7119981 - 7120029
Alignment:
Q  20 ccatacccgatggaatagtggacttcttgcttcaaaactcaccgtcagc 68  Q
    ||||||| ||||||||||| ||||| ||||||||||||||||| |||||    
T  7119981 ccatacctgatggaatagtcgactttttgcttcaaaactcaccttcagc 7120029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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