View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_42 (Length: 370)
Name: NF17452_low_42
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 38 - 360
Target Start/End: Complemental strand, 428747 - 428420
Alignment:
| Q |
38 |
tttatgaattttctactnnnnnnnntctcttgtatgaatatcatagaaatnnnnnnntttatttctgttactgcgaaaatatattctaacttgaatttga |
137 |
Q |
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| T |
428747 |
tttatgaattttctactaaaaaaaatctcttgtatgaatatcatagaaataaaatt-tttatttctgttactgcgaaaatatattctaacttgaatttga |
428649 |
T |
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| Q |
138 |
gtccatctttaacnnnnnnnnca-----catgaaattgagtcacttgtaaaacnnnnnnnnnn-gactttgcctctattgtagggttcttgtggtttagg |
231 |
Q |
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| T |
428648 |
gtccatctttaacaaaaaaaaaaaaatacatgaaattgagtcacttgtaaaacaaaacaaaaaagactttgcctctattgtagagttcttgtggtttagg |
428549 |
T |
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| Q |
232 |
agtcaacttttcaacaattaatcattaccaagaacacaatcatttcaattaacaacttgttatgtcataatgtaaaataacctacaaattacaatgccat |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
428548 |
agtcaacttttcaacaattaatcattaccaagaacacaatcatttcaattaacaacttgttatgtcataatgtaaaataacctacaaattacaatgccat |
428449 |
T |
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| Q |
332 |
aatcatctaacctataaacaccgaccttt |
360 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
428448 |
aatcatctaacctataaacaccgaccttt |
428420 |
T |
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