View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_43 (Length: 369)
Name: NF17452_low_43
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 354
Target Start/End: Original strand, 41822353 - 41822695
Alignment:
| Q |
13 |
taggtacatggaattatgaaaagaacatcacaaacaactactgaaagaacnnnnnnn-tgaactaaaaatacgaggtaaagttcatcatacataacagct |
111 |
Q |
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| T |
41822353 |
taggtacatggaattatgaaaagaacatcacaaacaactactgaaagaacaaaaaaaatgaactaaaaatacgaggtaaagttcatcatacataacagct |
41822452 |
T |
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| Q |
112 |
catcactctgcatcacctaaaaatacaattgctaactagaggaattagaacttaaatttcaaaatcattaaacacaataattgaaaatatgtagaggaaa |
211 |
Q |
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| T |
41822453 |
catcactctgcatcacctaaaaatacaattgctaactagaggaattagaacttaaatttcaaaatcattaaacacaataattgaaaatatgtagaggaaa |
41822552 |
T |
|
| Q |
212 |
taggacaaaaaatggtatacctagcatccttgaagaaagtgcaaattggtattctcatccaatcacctatagaaaacaaactctctttctctgccatctc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41822553 |
taggacaaaaaatggtatacctagcatccttgaagaaagtgcaaattggtattctcatccaatcacctatagaaaacaaactctctttctctgccatctc |
41822652 |
T |
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| Q |
312 |
tgaagtgccaattcactgttttaggtgaaaaacagaagagagt |
354 |
Q |
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| T |
41822653 |
tgaagtgccaattcactgttttaggtgaaaaacagaagagagt |
41822695 |
T |
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