View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_50 (Length: 332)

Name: NF17452_low_50
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_50
NF17452_low_50
[»] chr4 (10 HSPs)
chr4 (219-313)||(9570095-9570189)
chr4 (83-210)||(9601970-9602094)
chr4 (108-210)||(9581063-9581162)
chr4 (108-210)||(9586758-9586857)
chr4 (219-283)||(37895976-37896040)
chr4 (110-146)||(9593148-9593184)
chr4 (27-80)||(9581000-9581051)
chr4 (219-281)||(9581383-9581444)
chr4 (27-80)||(9586695-9586746)
chr4 (219-281)||(9587078-9587139)
[»] chr6 (2 HSPs)
chr6 (220-293)||(29145698-29145771)
chr6 (219-283)||(32740338-32740402)
[»] chr7 (1 HSPs)
chr7 (219-293)||(42446739-42446813)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 219 - 313
Target Start/End: Complemental strand, 9570189 - 9570095
Alignment:
Q  219 tttcattgatatggaaatcagataagtttgcaaatcgaaatagattaaacattcaaaataaaatttgtaaagcaatacaaccaaaagggactctc 313  Q
    |||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||   ||||||||||||||||||||| |||||    
T  9570189 tttcattgatattgaaatcagataagtttgcaaatggaaacagattaaacattcaaaataaaattgacaaagcaatacaaccaaaagggtctctc 9570095  T

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Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 9601970 - 9602094
Alignment:
Q  83 gtataataaggaacattaaaaggctggtgaagtagattgttcaagctacattaatggccatccagttcgagaccgtgtaataaccatgatattatttcac 182  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| | | ||| || |||||  |||||||| | ||   ||||||||    
T  9601970 gtataataaagaacattaaaaggctggtgaagtatattgttcaagctacattaatggtcgttcagatcaagacctcgtaataactacga---tatttcac 9602066  T
Q  183 atgacaaaaatcaatattgaactcaaaa 210  Q
    | |||||||||||| |||||||||||||    
T  9602067 acgacaaaaatcaaaattgaactcaaaa 9602094  T

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Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 9581063 - 9581162
Alignment:
Q  108 ggtgaagtagattgttcaagctacattaatggccatccagttcgagaccgtgtaataaccatgatattatttcacatgacaaaaatcaatattgaactca 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||    ||||||| ||||   |||||||||  ||||||||||  ||||||||||    
T  9581063 ggtgaagtagattattcaagctacattaatggccatccagttcaagacgtcataataacgatga---tatttcacacaacaaaaatcagaattgaactca 9581159  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 108 - 210
Target Start/End: Original strand, 9586758 - 9586857
Alignment:
Q  108 ggtgaagtagattgttcaagctacattaatggccatccagttcgagaccgtgtaataaccatgatattatttcacatgacaaaaatcaatattgaactca 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||| ||||    ||||||| ||||   |||||||||  ||||||||||  ||||||||||    
T  9586758 ggtgaagtagattattcaagctacattaatggccatccagttcaagacgtcataataacgatga---tatttcacacaacaaaaatcagaattgaactca 9586854  T

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Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 37896040 - 37895976
Alignment:
Q  219 tttcattgatatggaaatcagataagtttgcaaatcgaaatagattaaacattcaaaataaaatt 283  Q
    |||||||||||||||||||||||||||| |||||  |||| ||| ||||||||||||||||||||    
T  37896040 tttcattgatatggaaatcagataagttcgcaaaaagaaagagactaaacattcaaaataaaatt 37895976  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 9593148 - 9593184
Alignment:
Q  110 tgaagtagattgttcaagctacattaatggccatcca 146  Q
    |||||||||||||||||||||||||||||||||||||    
T  9593148 tgaagtagattgttcaagctacattaatggccatcca 9593184  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 9581000 - 9581051
Alignment:
Q  27 acacttatgcttattataggaaggttgcagacataacaccaaaaactcgttaga 80  Q
    |||||||||||||||||| |||||||  |||||||  |||||||||||||||||    
T  9581000 acacttatgcttattataagaaggttttagacata--accaaaaactcgttaga 9581051  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 9581383 - 9581444
Alignment:
Q  219 tttcattgatatggaaatcagataagtttgcaaatcgaaatagattaaacattcaaaataaaa 281  Q
    ||||| |||||||||||||| | ||||| |||||| |||| ||| ||||||||||||||||||    
T  9581383 tttcaatgatatggaaatcaaa-aagttcgcaaatagaaagagactaaacattcaaaataaaa 9581444  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 9586695 - 9586746
Alignment:
Q  27 acacttatgcttattataggaaggttgcagacataacaccaaaaactcgttaga 80  Q
    |||||||||||||||||| |||||||  |||||||  |||||||||||||||||    
T  9586695 acacttatgcttattataagaaggttttagacata--accaaaaactcgttaga 9586746  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 281
Target Start/End: Original strand, 9587078 - 9587139
Alignment:
Q  219 tttcattgatatggaaatcagataagtttgcaaatcgaaatagattaaacattcaaaataaaa 281  Q
    ||||| |||||||||||||| | ||||| |||||| |||| ||| ||||||||||||||||||    
T  9587078 tttcaatgatatggaaatcaaa-aagttcgcaaatagaaagagactaaacattcaaaataaaa 9587139  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 293
Target Start/End: Complemental strand, 29145771 - 29145698
Alignment:
Q  220 ttcattgatatggaaatcagataagtttgcaaatcgaaatagattaaacattcaaaataaaatttgtaaagcaa 293  Q
    |||| |||||||||||||| || |||||| |||| |||| |||  |||||||||||||||||||  ||||||||    
T  29145771 ttcaatgatatggaaatcaaatcagtttgtaaatggaaagagaaaaaacattcaaaataaaattgataaagcaa 29145698  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 32740338 - 32740402
Alignment:
Q  219 tttcattgatatggaaatcagataagtttgcaaatcgaaatagattaaacattcaaaataaaatt 283  Q
    |||||||||||||| |||||||| ||||| ||||   ||| | | ||||||||||||||||||||    
T  32740338 tttcattgatatgggaatcagattagtttccaaaagtaaaaaaactaaacattcaaaataaaatt 32740402  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 42446813 - 42446739
Alignment:
Q  219 tttcattgatatggaaatcagataagtttgcaaatcgaaatagattaaacattcaaaataaaatttgtaaagcaa 293  Q
    |||||||||||| ||||||||||  ||||||||||  ||| ||| ||||||||| || |||||||  ||||||||    
T  42446813 tttcattgatatagaaatcagattcgtttgcaaatgaaaagagactaaacattcgaagtaaaattcataaagcaa 42446739  T

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