View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17452_low_53 (Length: 325)
Name: NF17452_low_53
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_53 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 17 - 291
Target Start/End: Complemental strand, 44708528 - 44708254
Alignment:
| Q |
17 |
aaaatggcggtgacaactcactctctaaccgctacagaaaagaaacattggtggctcacaaaccgtaaggtaacattttcacacaacatgattttctctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44708528 |
aaaatggcggtgacaactcactctctaaccgctacagaaaagaaacattggtggctcacaaaccgtaaggtaacattttcacacaacatgattttctctt |
44708429 |
T |
|
| Q |
117 |
taaaccatcctagttaatgatgttttttgtgtgttcttcttaatgttgtttgtatatctagttccttgctccgatcgaatcggaagacagcattttcggt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44708428 |
taaaccatcctagttaatgatgttttttgtgtgttcttcttaatgttgtttgtatatctagttccttgctccgatcgaatcggaagacagcattttcggt |
44708329 |
T |
|
| Q |
217 |
aataaccaagtttatagtttctagtaacatttttctgagaaacaaacaatacatgttctttttgttaatgtttta |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44708328 |
aataaccaagtttatagtttctagtaacatttttctgagaaacaaacaatacatgttctttttgttaatgtttta |
44708254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University