View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_56 (Length: 309)
Name: NF17452_low_56
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_56 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 31662820 - 31663110
Alignment:
| Q |
1 |
tagaagattactttttgaagaaattatatgctttgagacccttaatcttatccacaacagcactatttctgatgatcaaaatgccattgagtttgtttgt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| || |
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| T |
31662820 |
tagaagattactttttgaagaaattatatgctttgagacccttaatcttatccacgacagcactatttctgatgatcaaaataccattgagtttgttagt |
31662919 |
T |
|
| Q |
101 |
tgaagctcaaccaatccaaccgcaagtagaagtgctaacttcaaaatgttggacatcgttggccatttttctacataaccaaagattatactaaaaatat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31662920 |
tgaagctcaaccaatccaaccgcaagtagaagtgctaacttcaaaatgttggacatcattggccatttttctacataaccaaagattatactaaaaatat |
31663019 |
T |
|
| Q |
201 |
gtcaaaatcgacaagatatactaaagcaaagcagcaccctttactggaagatcaaagaaatgaatcgggggtagattccatgtttcttaat |
291 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31663020 |
gtcaaaatcgacaagatatactaaagcaaagcagcacccattactggaagatcaaagaaatgaatcgggggtagattccatgtttcttaat |
31663110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 22559332 - 22559249
Alignment:
| Q |
13 |
ttttgaagaaattatatgctttgagacccttaatcttatccacaacagcactatttctgatgatcaaaatgccattgagtttgt |
96 |
Q |
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|||||||| | |||||||||||||||| ||||||| |||||||| | || | ||||||||||| || ||| ||||||||||| |
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| T |
22559332 |
ttttgaaggagttatatgctttgagacacttaatcccatccacaagaacagtgtttctgatgatgaagatgatattgagtttgt |
22559249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 7277714 - 7277758
Alignment:
| Q |
13 |
ttttgaagaaattatatgctttgagacccttaatcttatccacaa |
57 |
Q |
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|||||||| |||||||||||||||||| ||||||| |||||||| |
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| T |
7277714 |
ttttgaaggaattatatgctttgagacacttaatccaatccacaa |
7277758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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