View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_57 (Length: 308)
Name: NF17452_low_57
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 3309011 - 3309308
Alignment:
| Q |
1 |
tttctgtatatgtattagcacgttaatgatgttaaacaaagcttaaagtcaaaag------tgaaagtttgtttgaatgtgcatggaattgcatctgttg |
94 |
Q |
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| T |
3309011 |
tttctatatatgtattagcacgttaacgatgttaaacaaagcttaaagtcaaaagtgaaagtgaaagtttgtttgaatgtgcatggaattgcacctgttg |
3309110 |
T |
|
| Q |
95 |
acttggcaactgttggtgctggaactgtcgcgtcttaaaagtattgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaattt |
194 |
Q |
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| T |
3309111 |
acttggcagctgttggttctggaattgtcgcgtcttaaaagttttgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaattt |
3309210 |
T |
|
| Q |
195 |
acaatcaagtcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagagacaatcaactaca |
292 |
Q |
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| T |
3309211 |
acaatcaagtcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagacacaatcaactaca |
3309308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 52 - 107
Target Start/End: Complemental strand, 3227842 - 3227787
Alignment:
| Q |
52 |
aaagtgaaagtttgtttgaatgtgcatggaattgcatctgttgacttggcaactgt |
107 |
Q |
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| T |
3227842 |
aaagtgaaagttcgtttgaatgtgcatggaattgcatctgttgacttggcaactgt |
3227787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 8030566 - 8030530
Alignment:
| Q |
195 |
acaatcaagtcgctctctttaagatgttttgtggcac |
231 |
Q |
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| T |
8030566 |
acaatcaggtcgctctctttaagacgttttgtggcac |
8030530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 275
Target Start/End: Complemental strand, 19578495 - 19578424
Alignment:
| Q |
204 |
tcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctcca |
275 |
Q |
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| T |
19578495 |
tcgctctctttaagacgttttgtggcactacctaaaattgtgcaaggaagactatcaaccatgctgcctcca |
19578424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 12254092 - 12254120
Alignment:
| Q |
203 |
gtcgctctctttaagatgttttgtggcac |
231 |
Q |
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| T |
12254092 |
gtcgctctctttaagatgttttgtggcac |
12254120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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