View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_6 (Length: 644)

Name: NF17452_low_6
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_6
NF17452_low_6
[»] chr8 (4 HSPs)
chr8 (290-627)||(19926136-19926473)
chr8 (296-382)||(14293936-14294022)
chr8 (293-324)||(3119810-3119841)
chr8 (207-239)||(19728103-19728135)
[»] chr3 (17 HSPs)
chr3 (15-289)||(9586766-9587040)
chr3 (92-244)||(783484-783636)
chr3 (95-239)||(1438228-1438371)
chr3 (203-237)||(13526841-13526875)
chr3 (198-244)||(43992198-43992244)
chr3 (17-54)||(37752581-37752618)
chr3 (169-239)||(7942728-7942798)
chr3 (206-239)||(1936773-1936806)
chr3 (198-239)||(9584878-9584919)
chr3 (172-217)||(37757480-37757525)
chr3 (204-244)||(771269-771309)
chr3 (203-231)||(1889382-1889410)
chr3 (203-231)||(1897461-1897489)
chr3 (203-231)||(1906907-1906935)
chr3 (203-231)||(2932151-2932179)
chr3 (198-230)||(12218279-12218311)
chr3 (194-238)||(37753114-37753158)
[»] chr1 (4 HSPs)
chr1 (294-627)||(46615542-46615863)
chr1 (209-240)||(51762698-51762729)
chr1 (208-238)||(23898456-23898486)
chr1 (200-238)||(24513300-24513338)
[»] chr5 (4 HSPs)
chr5 (301-417)||(8783996-8784112)
chr5 (294-422)||(4919802-4919927)
chr5 (432-512)||(4919730-4919812)
chr5 (198-239)||(23644652-23644693)
[»] chr4 (2 HSPs)
chr4 (294-407)||(45662548-45662661)
chr4 (206-239)||(27471385-27471418)
[»] scaffold0219 (1 HSPs)
scaffold0219 (305-417)||(9007-9118)
[»] chr6 (2 HSPs)
chr6 (294-418)||(6862647-6862771)
chr6 (198-233)||(9819614-9819649)
[»] chr2 (3 HSPs)
chr2 (110-244)||(33038430-33038564)
chr2 (110-218)||(33020575-33020683)
chr2 (196-244)||(33026898-33026946)
[»] scaffold0044 (1 HSPs)
scaffold0044 (203-238)||(89387-89422)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 290 - 627
Target Start/End: Original strand, 19926136 - 19926473
Alignment:
Q  290 cattggcggagctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctc 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19926136 cattggcggagctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctc 19926235  T
Q  390 aaatataaacattgcaccacacttgcaccagctgcatcacaattgcactaactctcactcttttcctagctgtgttgtttacgtatggtgaaatgagata 489  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  19926236 aaatataaacattgcaccacacttgcacccgctgcatcacaattgcactaactctcactcttttcctagctgtgttgtttacgtatagtgaaatgagata 19926335  T
Q  490 aaacttgtgactgacaattgcagcagctagcacgtgtcctttgatagcaagtattgtaatatcatgtcaatgtggcacattattaatttgttttggtgaa 589  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  19926336 aagcttgtgactgacaattgcagcagctagcacgtgtcctttgatagcaagtattgtaatatcatgtcaatgtggcacattgttaatttgttttggtgaa 19926435  T
Q  590 tgtctagtattgtaattgtaatattattatattgatag 627  Q
    ||| ||||||||||||||||||||||||||||||||||    
T  19926436 tgtgtagtattgtaattgtaatattattatattgatag 19926473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 382
Target Start/End: Original strand, 14293936 - 14294022
Alignment:
Q  296 cggagctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaa 382  Q
    |||| ||||||| || | |||||||| |||||||| |||||||||| ||||||||||||||| ||||| ||||| ||||| ||||||    
T  14293936 cggatctacataaaggttagggggttaaagtgaacatcctcaattcataattttacattcaatttattgtgtttatctcacgttgaa 14294022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 293 - 324
Target Start/End: Complemental strand, 3119841 - 3119810
Alignment:
Q  293 tggcggagctacatagagctcagggggttcaa 324  Q
    ||||||||||||||||||||||||||||||||    
T  3119841 tggcggagctacatagagctcagggggttcaa 3119810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 239
Target Start/End: Complemental strand, 19728135 - 19728103
Alignment:
Q  207 acaaggtgatatcaaactctcaacgtagacttc 239  Q
    ||||||||||||||||||||||||| |||||||    
T  19728135 acaaggtgatatcaaactctcaacgcagacttc 19728103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 289
Target Start/End: Original strand, 9586766 - 9587040
Alignment:
Q  15 gagaagaaacaactcaaaccaacaaacaattgaaaataaccgaaatttttcaacttaaagattccatcaaccattacatccaacaatacatgcataaaat 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9586766 gagaacaaacaactcaaaccaacaaacaattgaaaataaccgaaatttttcaacttaaagattccatcaaccattacatccaacaatacatgcataaaat 9586865  T
Q  115 aaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaacaaggtg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9586866 aaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaataaggtg 9586965  T
Q  215 atatcaaactctcaacgtagacttccgggttcaagtaactgctactaatatgttgaaactcaggtatattaaaag 289  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9586966 atatcaaactctcaatgtagacttccgggttcaagtaactgctactaatatgttgaaactcaggtatattaaaag 9587040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 92 - 244
Target Start/End: Original strand, 783484 - 783636
Alignment:
Q  92 atccaacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaac 191  Q
    |||||||||||||| ||||||||||| |||||||  | |||||||||||||||| |||| ||||||| | ||  ||||||||||||| ||||||||||||    
T  783484 atccaacaatacatacataaaataaacaacataaacagaaattaatcatatatagtttgcagttgaaccgcatgcacaagtgacatagcatagcatcaac 783583  T
Q  192 aacttgacatcaagaacaaggtgatatcaaactctcaacgtagacttccgggt 244  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  783584 atcttgacattaagaacaaggtgatatcaaactctcaacgtagacttccgggt 783636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 1438371 - 1438228
Alignment:
Q  95 caacaatacatgcataaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaac 194  Q
    |||||||||||||| ||||||||||||||||  | ||||||| ||||| ||||||| ||||||||||||  | ||||||| | | ||||||||||||| |    
T  1438371 caacaatacatgca-aaaataaataacataaacataaattaaccatatttattttgcagttgaatctcatgctcaagtgatacagcatagcatcaacatc 1438273  T
Q  195 ttgacatcaagaacaaggtgatatcaaactctcaacgtagacttc 239  Q
    ||||||| || ||||||||||||||||||||||||||||||||||    
T  1438272 ttgacattaaaaacaaggtgatatcaaactctcaacgtagacttc 1438228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 237
Target Start/End: Complemental strand, 13526875 - 13526841
Alignment:
Q  203 aagaacaaggtgatatcaaactctcaacgtagact 237  Q
    |||||||||||||||||||||||||||||||||||    
T  13526875 aagaacaaggtgatatcaaactctcaacgtagact 13526841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 43992244 - 43992198
Alignment:
Q  198 acatcaagaacaaggtgatatcaaactctcaacgtagacttccgggt 244  Q
    |||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  43992244 acattaagaacaaggtgatatcaaactctcaacgtaaacttcagggt 43992198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 37752581 - 37752618
Alignment:
Q  17 gaagaaacaactcaaaccaacaaacaattgaaaataac 54  Q
    |||||||||||||||||||||||| |||||||||||||    
T  37752581 gaagaaacaactcaaaccaacaaataattgaaaataac 37752618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 169 - 239
Target Start/End: Complemental strand, 7942798 - 7942728
Alignment:
Q  169 aagtgacataacatagcatcaacaacttgacatcaagaacaaggtgatatcaaactctcaacgtagacttc 239  Q
    |||||||||| ||||||||| | | | | |||| |||| ||||||||||||||||||| || |||||||||    
T  7942798 aagtgacatagcatagcatccaaaccctaacattaagagcaaggtgatatcaaactcttaatgtagacttc 7942728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 1936773 - 1936806
Alignment:
Q  206 aacaaggtgatatcaaactctcaacgtagacttc 239  Q
    |||||||||||||||||||||||||| |||||||    
T  1936773 aacaaggtgatatcaaactctcaacgcagacttc 1936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 9584878 - 9584919
Alignment:
Q  198 acatcaagaacaaggtgatatcaaactctcaacgtagacttc 239  Q
    |||||||| ||||||||||||||||||||| || ||||||||    
T  9584878 acatcaaggacaaggtgatatcaaactctcgacatagacttc 9584919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 37757480 - 37757525
Alignment:
Q  172 tgacataacatagcatcaacaacttgacatcaagaacaaggtgata 217  Q
    |||||| |||||||||| ||| |||||||| |||||||||||||||    
T  37757480 tgacatgacatagcatctacaccttgacattaagaacaaggtgata 37757525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 771269 - 771309
Alignment:
Q  204 agaacaaggtgatatcaaactctcaacgtagacttccgggt 244  Q
    |||||||||||||||||||||||| | ||||||||| ||||    
T  771269 agaacaaggtgatatcaaactctctatgtagacttctgggt 771309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 1889382 - 1889410
Alignment:
Q  203 aagaacaaggtgatatcaaactctcaacg 231  Q
    |||||||||||||||||||||||||||||    
T  1889382 aagaacaaggtgatatcaaactctcaacg 1889410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 1897461 - 1897489
Alignment:
Q  203 aagaacaaggtgatatcaaactctcaacg 231  Q
    |||||||||||||||||||||||||||||    
T  1897461 aagaacaaggtgatatcaaactctcaacg 1897489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 1906907 - 1906935
Alignment:
Q  203 aagaacaaggtgatatcaaactctcaacg 231  Q
    |||||||||||||||||||||||||||||    
T  1906907 aagaacaaggtgatatcaaactctcaacg 1906935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 231
Target Start/End: Complemental strand, 2932179 - 2932151
Alignment:
Q  203 aagaacaaggtgatatcaaactctcaacg 231  Q
    |||||||||||||||||||||||||||||    
T  2932179 aagaacaaggtgatatcaaactctcaacg 2932151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 12218311 - 12218279
Alignment:
Q  198 acatcaagaacaaggtgatatcaaactctcaac 230  Q
    |||| ||||||||||||||||||||||||||||    
T  12218311 acattaagaacaaggtgatatcaaactctcaac 12218279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 37753114 - 37753158
Alignment:
Q  194 cttgacatcaagaacaaggtgatatcaaactctcaacgtagactt 238  Q
    |||||||| |||||||||||||||||| |||||||  ||||||||    
T  37753114 cttgacattaagaacaaggtgatatcagactctcagtgtagactt 37753158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 294 - 627
Target Start/End: Original strand, 46615542 - 46615863
Alignment:
Q  294 ggcggagctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctcaaat 393  Q
    |||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  46615542 ggcggagctacatagagctcggagggttcaagtgcaccccctcaattcttaattttacattcaaattat-----------catgttgaatcccctcaaat 46615630  T
Q  394 ataaacattgcaccacacttgcaccagctgcatcacaattgcactaactctcactcttttcctagctgtgttgtttacgtatggtgaaatgagataaaac 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||||| ||| |    
T  46615631 ataaacattgcaccacacttgcaccagctgcatcacaattgcactaactctgactcttttcctgactgtgttgtttaagtatggtgaaatgagacaaagc 46615730  T
Q  494 ttgtgactgacaattgcagcagctagcacgtgtcctttgatagcaagtattgtaatatcatgtcaatgtggcacattattaatttgttttggtgaatgtc 593  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| || ||  ||    ||||||||||||||||||| | ||| |||||||||    
T  46615731 ttgtaactgacaattgcagcagctagcacgtgtcctttgatagcaagtattatactaatatcatcatgtggcacattattaattag-tttagtgaatgtc 46615829  T
Q  594 tagtattgtaattgtaatattattatattgatag 627  Q
    |||||||||||||||||||||||||| |||||||    
T  46615830 tagtattgtaattgtaatattattatcttgatag 46615863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 240
Target Start/End: Original strand, 51762698 - 51762729
Alignment:
Q  209 aaggtgatatcaaactctcaacgtagacttcc 240  Q
    ||||||||||||||||||||||||||||||||    
T  51762698 aaggtgatatcaaactctcaacgtagacttcc 51762729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 23898456 - 23898486
Alignment:
Q  208 caaggtgatatcaaactctcaacgtagactt 238  Q
    |||||||||||||||||||||||||||||||    
T  23898456 caaggtgatatcaaactctcaacgtagactt 23898486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 24513338 - 24513300
Alignment:
Q  200 atcaagaacaaggtgatatcaaactctcaacgtagactt 238  Q
    ||||||| ||||||||||||||||| |||||||||||||    
T  24513338 atcaagatcaaggtgatatcaaactttcaacgtagactt 24513300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 301 - 417
Target Start/End: Original strand, 8783996 - 8784112
Alignment:
Q  301 ctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctcaaatataaaca 400  Q
    |||||||||| | |||| ||| ||||||| | ||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  8783996 ctacatagagttgagggagtttaagtgaaacacctcaattcataattttatattcaaattgttatgtttttctcatgttgaatcccctcaaatgtaaaca 8784095  T
Q  401 ttgcaccacacttgcac 417  Q
    |||||||||||||||||    
T  8784096 ttgcaccacacttgcac 8784112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 294 - 422
Target Start/End: Complemental strand, 4919927 - 4919802
Alignment:
Q  294 ggcggagctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctcaaat 393  Q
    |||||| |||||||||| ||||||  |||||||||| | |||||||||||||||||| ||| || |||||||||||||||||||||||| ||| | ||||    
T  4919927 ggcggacctacatagaggtcaggg--ttcaagtgaatcccctcaattcttaattttatatt-aatttattatgtttttctcatgttgaaccccttaaaat 4919831  T
Q  394 ataaacattgcaccacacttgcaccagct 422  Q
     ||||||||||||||||||||||| ||||    
T  4919830 ctaaacattgcaccacacttgcactagct 4919802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 512
Target Start/End: Complemental strand, 4919812 - 4919730
Alignment:
Q  432 ttgcactaactctcactcttttcctagctgtgttgtttacgtatggtga--aatgagataaaacttgtgactgacaattgcag 512  Q
    |||||||| |||||||| ||||||||||| ||| ||||| ||||| |||  ||||||| |||  || ||||||||||||||||    
T  4919812 ttgcactagctctcacttttttcctagctatgtagtttaagtatgctgagcaatgagacaaagtttatgactgacaattgcag 4919730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 239
Target Start/End: Complemental strand, 23644693 - 23644652
Alignment:
Q  198 acatcaagaacaaggtgatatcaaactctcaacgtagacttc 239  Q
    |||| |||||||||||||||||||||| |||||| |||||||    
T  23644693 acattaagaacaaggtgatatcaaactttcaacgcagacttc 23644652  T

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Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 294 - 407
Target Start/End: Original strand, 45662548 - 45662661
Alignment:
Q  294 ggcggagctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctcaaat 393  Q
    ||||||||||||||||| |||||| ||||||||||||| ||||| ||||||| |||||||||||| | ||| | ||||  ||||||||| ||||||||||    
T  45662548 ggcggagctacatagagttcagggtgttcaagtgaaccccctcacttcttaaatttacattcaaaatgttaggctttttccatgttgaaccccctcaaat 45662647  T
Q  394 ataaacattgcacc 407  Q
     |||||||||||||    
T  45662648 ctaaacattgcacc 45662661  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 27471385 - 27471418
Alignment:
Q  206 aacaaggtgatatcaaactctcaacgtagacttc 239  Q
    |||||||||||| |||||||||||||||||||||    
T  27471385 aacaaggtgataccaaactctcaacgtagacttc 27471418  T

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Target: scaffold0219 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 305 - 417
Target Start/End: Original strand, 9007 - 9118
Alignment:
Q  305 atagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattattatgtttttctcatgttgaatcccctcaaatataaacattgc 404  Q
    ||||||||||||  |||||| |||||| ||| ||||||||| ||||||| ||||||||||||||||  ||||| | ||||||||||||  ||||||||||    
T  9007 atagagctcaggttgttcaattgaacc-ccttaattcttaaatttacatacaaattattatgttttcatcatgataaatcccctcaaaattaaacattgc 9105  T
Q  405 accacacttgcac 417  Q
    |||| ||||||||    
T  9106 accatacttgcac 9118  T

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Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 294 - 418
Target Start/End: Original strand, 6862647 - 6862771
Alignment:
Q  294 ggcggagctacatagagctcagggggttcaagtgaacctcctcaattcttaattttacattcaaattatta-tgtttttctcatgttgaatcccctcaaa 392  Q
    ||||||||||||||||| || ||| || |||||||||| ||||| ||||||| |||||||||||| | ||| |  ||||| |||  |||| |||||||||    
T  6862647 ggcggagctacatagagttctgggtgtccaagtgaaccccctcacttcttaaatttacattcaaaatgttagtcattttc-catactgaaccccctcaaa 6862745  T
Q  393 tataaacattgcaccacacttgcacc 418  Q
    | |||||||||||||||||| |||||    
T  6862746 tctaaacattgcaccacactcgcacc 6862771  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 233
Target Start/End: Original strand, 9819614 - 9819649
Alignment:
Q  198 acatcaagaacaaggtgatatcaaactctcaacgta 233  Q
    |||| |||||||||||||||||||||||||||||||    
T  9819614 acattaagaacaaggtgatatcaaactctcaacgta 9819649  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 33038564 - 33038430
Alignment:
Q  110 aaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaaca 209  Q
    |||| |||||| ||||  |||||| || ||||||| | ||| |||| |||||||    ||||||||||| ||||||||| ||| | | |||| |||||||    
T  33038564 aaaagaaataaaataaacaaaaataaaccatatatttgttgcagtttaatctcatgttcaagtgacatatcatagcatctacatcctaacattaagaaca 33038465  T
Q  210 aggtgatatcaaactctcaacgtagacttccgggt 244  Q
    ||||||||||| ||| |||| ||||||||| ||||    
T  33038464 aggtgatatcagactttcaatgtagacttctgggt 33038430  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 33020683 - 33020575
Alignment:
Q  110 aaaataaataacataaggaaaaattaatcatatatattttgaagttgaatctcaaacacaagtgacataacatagcatcaacaacttgacatcaagaaca 209  Q
    |||| |||||||||||  |||||| || ||||||| | ||| ||||||||| ||    ||||||||||| |||| |||| ||| | | |||| |||||||    
T  33020683 aaaagaaataacataaacaaaaataaaacatatatttgttgcagttgaatcccaggttcaagtgacatatcataccatctacatcctaacattaagaaca 33020584  T
Q  210 aggtgatat 218  Q
    |||||||||    
T  33020583 aggtgatat 33020575  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 244
Target Start/End: Complemental strand, 33026946 - 33026898
Alignment:
Q  196 tgacatcaagaacaaggtgatatcaaactctcaacgtagacttccgggt 244  Q
    |||||| |||||||||||||||||| ||| |||| ||||||||| ||||    
T  33026946 tgacattaagaacaaggtgatatcagactttcaatgtagacttctgggt 33026898  T

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Target: scaffold0044 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 89422 - 89387
Alignment:
Q  203 aagaacaaggtgatatcaaactctcaacgtagactt 238  Q
    ||||||||||||||||||||||||||| ||||||||    
T  89422 aagaacaaggtgatatcaaactctcaatgtagactt 89387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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