View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17452_low_62 (Length: 288)

Name: NF17452_low_62
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17452_low_62
NF17452_low_62
[»] chr5 (1 HSPs)
chr5 (12-288)||(23165852-23166132)


Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 23166132 - 23165852
Alignment:
Q  12 agagatgaagatttggcatgccgtgccacaaatgactccacaagtgggttcacaagctgaggtgcttcatccttcatgaagtggacagttaacaaagtaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23166132 agagatgaagatttggcatgccgtgccacaaatgactccacaagtgggttcacaagctgaggtgcttcatccttcatgaagtggacagttaacaaagtaa 23166033  T
Q  112 gaagattattgcaaacaaaatagagttattcatttgattagatatgaccacttaatgttgcaataggttctaacataaagatagaaatgaga----gaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  23166032 gaagattattgcaaacaaaatagagttattcatttgattagatatgaccacttaatgttgcaataggttctaacataaagatagaaatgagagaaagaaa 23165933  T
Q  208 ataaacataccaaaacaagcattgaagaaaaatgatatatttatgtaaaccatcattatgaagcaatattgaatcttaatt 288  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23165932 ataaacataccaaaacaaacattgaagaaaaatgatatatttatgtaaaccatcattatggagcaatattgaatcttaatt 23165852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University