View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_65 (Length: 278)
Name: NF17452_low_65
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 14383733 - 14383500
Alignment:
| Q |
11 |
gagatgaagacggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtga |
110 |
Q |
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| T |
14383733 |
gagatggagacggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacgatcgcacggtga |
14383634 |
T |
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| Q |
111 |
aggatggaggaggatgaggtgttgctgctctctagagagaagaagaaagaaggaatcgcggttcagaaagggaaaaatgaaagtggtaattgtaattttc |
210 |
Q |
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| T |
14383633 |
aggatggaggaggatgaggtgttgctgctctctagagagaaga----agaaggaatcgcggttcagaaagggaaaaatgaaagtggtaattgtaactttc |
14383538 |
T |
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| Q |
211 |
attgtaactcaaggacaatatagtaatttccaacctat |
248 |
Q |
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| T |
14383537 |
attgtaactcaaggacaatatagtaatttccagcctat |
14383500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 22 - 242
Target Start/End: Original strand, 18994376 - 18994595
Alignment:
| Q |
22 |
ggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtgaaggatggagga |
121 |
Q |
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| T |
18994376 |
ggatgaagtctgaactgaaaacgatacagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtgaaggatggagga |
18994475 |
T |
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| Q |
122 |
ggatgaggtgttgctgctctctagagagaagaagaaagaaggaatcgcggttcagaaagggaaaaatgaaagtggtaattgtaattttcattgtaactca |
221 |
Q |
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| T |
18994476 |
ggatgaggtgttgctgctctctagagagaagaag-gaggaggaattgcggttcagaaaggaaaaaatgaaagtggtaattataattttcattgtaactca |
18994574 |
T |
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| Q |
222 |
aggacaatatagtaatttcca |
242 |
Q |
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| T |
18994575 |
aggacaatgtagtaatttcca |
18994595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 248
Target Start/End: Complemental strand, 21422213 - 21421989
Alignment:
| Q |
22 |
ggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatggaggaggaggaggcatcacggtcgcacggtgaaggatggagga |
121 |
Q |
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| T |
21422213 |
ggatgaagtctgaactaaaaacgatacagagggagggtgtggtagcggtgatagatggaggaggaggaggcatcacggtcacacggtgaaggatggagga |
21422114 |
T |
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| Q |
122 |
ggatgaggtgttgctgctctctagagagaagaagaaagaaggaatcgcggttcagaaagggaaaaatgaaagtggtaattgtaattttcattgtaactca |
221 |
Q |
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|||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
21422113 |
ggatgaggtgttgctgttctctagagagaagaag-aaggaggaatcgcggttcagaaaggaaaaaatgaaa-tggtaattgtaattttcattgtaactca |
21422016 |
T |
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| Q |
222 |
aggacaatatagtaatttccaacctat |
248 |
Q |
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| T |
21422015 |
aggacaatatagtaattttcagcctat |
21421989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 20038131 - 20038044
Alignment:
| Q |
161 |
aggaatcgcggttcagaaagggaaaaatgaaagtggtaattgtaattttcattgtaactcaaggacaatatagtaatttccaacctat |
248 |
Q |
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| T |
20038131 |
aggaatcacggttcagaaagggaaaaatgaaagtggtaattgtaattttcattgtaactcaaggacaatatagtaatttccagcctat |
20038044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 26063349 - 26063119
Alignment:
| Q |
12 |
agatgaagacggatgatgtcagaactaaaaactatagagagggagggtgtggtagcggtgatggatgga----ggaggaggaggcatcacggtcgcacgg |
107 |
Q |
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||||||||| |||||| ||| ||||| ||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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| T |
26063349 |
agatgaaga-ggatgaagtctgaactgaaaacgatatagagggagggtgtggtagcggtgatggatggatggaggaggaggaggcatcatggtcgcacgg |
26063251 |
T |
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| Q |
108 |
tgaaggatggaggaggatgaggtgttgctgctctctagagagaagaagaaagaaggaatcgcggttcagaaagggaaaaatgaaagtggtaattgtaatt |
207 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26063250 |
tgaaggatggaggaggatgaggtgctgctgctctctagagagaagaag-aaggaggaatcgcggttcagaaaggaaaaaatgaaagtggtaattgtaatt |
26063152 |
T |
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| Q |
208 |
ttcattgtaactcaaggacaatatagtaatttc |
240 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26063151 |
ttcattgtaactcaaggacaatatagtaatttc |
26063119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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