View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_7 (Length: 629)
Name: NF17452_low_7
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 4e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 9586753 - 9586597
Alignment:
| Q |
1 |
actttttaaattttaaatagttggatcatcgcattagagggtttgtcatttgattttttaagatttgagttacgatttagatgataaaatgttcttaatg |
100 |
Q |
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| T |
9586753 |
actttttaaattttaaatagttggatcatcgcattagagggtttgtcatttgattttttaagatttgagttacgatttagatgataaaatgttcttaatg |
9586654 |
T |
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| Q |
101 |
cggcaacaatttcttaatgtctgaaaacataaaagatagaacaatatggtagttgtt |
157 |
Q |
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| T |
9586653 |
cggcaacaatttcttaatgtctgaaaacataaaagatagaacaatatggtagttgtt |
9586597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 2502591 - 2502634
Alignment:
| Q |
40 |
ggtttgtcatttgattttttaagatttgagttacgatttagatg |
83 |
Q |
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| T |
2502591 |
ggtttgtcatttgattttctaagatttgcgttatgatttagatg |
2502634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 33027142 - 33027183
Alignment:
| Q |
31 |
gcattagagggtttgtcatttgattttttaagatttgagtta |
72 |
Q |
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| T |
33027142 |
gcattagatggtttgtcatttgattttctaaaatttgagtta |
33027183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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