View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17452_low_71 (Length: 256)
Name: NF17452_low_71
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_71 |
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| [»] scaffold0108 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 18061705 - 18061478
Alignment:
| Q |
15 |
tctaatgtgtaaatctcctatatataatctcttctggataatttattttcaataaattgattcaaccttaaattagcctatcaaattttatagaatttct |
114 |
Q |
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| T |
18061705 |
tctaatgtgtaaatctcctatatataatctcttctggataatttattttcaataaattgattcaaccttaaattagtctatcaaaatttatagaatttct |
18061606 |
T |
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| Q |
115 |
tcatgcatgcttatattgttaatgtgaaaatcaaattttaggaaacatttcaaggattatagtgaactcctattcaaaacatatggtgatcgtgtaaaac |
214 |
Q |
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| T |
18061605 |
tcatgcgtgcttatattgtttatgtaaaaatcaaattttaggaaacatttcaaggattacagtgaactcctattcaaaacatatggtgatcgtgtaaaac |
18061506 |
T |
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| Q |
215 |
attggactacatttaacgagccagaagt |
242 |
Q |
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| T |
18061505 |
attggactacatttaacgagccagaagt |
18061478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 15 - 242
Target Start/End: Complemental strand, 18091782 - 18091566
Alignment:
| Q |
15 |
tctaatgtgtaaatctcctatatataatctcttctggataatttattttcaataaattgattcaaccttaaattagcctatcaaattttatagaatttct |
114 |
Q |
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|||| |||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||||||| |||||| |||||||||||||| |
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| T |
18091782 |
tctattgtgtaaatctcctatatataatctcatctcgataatttatgttcaataaattaattcaacct-----------atcaaactttatagaatttct |
18091694 |
T |
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| Q |
115 |
tcatgcatgcttatattgttaatgtgaaaatcaaattttaggaaacatttcaaggattatagtgaactcctattcaaaacatatggtgatcgtgtaaaac |
214 |
Q |
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| T |
18091693 |
tcatgcatgcttacattgtttatataaaaatcaaactttaggaaacatttcaaggattacagtgaacttctattcaaaacatttggtgatcgagtgaaac |
18091594 |
T |
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| Q |
215 |
attggactacatttaacgagccagaagt |
242 |
Q |
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| T |
18091593 |
attgggctacacttaacgagccagaagt |
18091566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 54 - 238
Target Start/End: Original strand, 20396309 - 20396493
Alignment:
| Q |
54 |
aatttattttcaataaattgattcaaccttaaattagcctatcaaattttatagaatttcttcatgcatgcttatattgttaatgtgaaaatcaaatttt |
153 |
Q |
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| T |
20396309 |
aatttattttccataaattgattcaacattaaattaatctcacaaacattattgaatttcttcatgcatgcttatattgtttatgttaaaatcaaatttt |
20396408 |
T |
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| Q |
154 |
aggaaacatttcaaggattatagtgaactcctattcaaaacatatggtgatcgtgtaaaacattggactacatttaacgagccag |
238 |
Q |
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| T |
20396409 |
aggaaacatttcaaggattatagtgagctcctattcaaaacatatggtgatcgagtgaaatattggactacattgaatgagccag |
20396493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 55 - 221
Target Start/End: Complemental strand, 18123716 - 18123550
Alignment:
| Q |
55 |
atttattttcaataaattgattcaaccttaaattagcctatcaaattttatagaatttcttcatgcatgcttatattgttaatgtgaaaatcaaatttta |
154 |
Q |
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| T |
18123716 |
atttattttccataaattgattcaaccttaaattaatctcacaaacattattgaatttcttcatgcatgcttatattgtttatgttaaaatcaaatttta |
18123617 |
T |
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| Q |
155 |
ggaaacatttcaaggattatagtgaactcctattcaaaacatatggtgatcgtgtaaaacattggac |
221 |
Q |
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| T |
18123616 |
ggaaacatttcaaggattatagtgagctcctattcaaaacatatggtgatcgagtgaaatattggac |
18123550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 16261 - 16358
Alignment:
| Q |
147 |
aaattttaggaaacatttcaaggattatagtgaactcctattcaaaacatatggtgatcgtgtaaaacattggactacatttaacgagccagaagtga |
244 |
Q |
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| T |
16261 |
aaattgtaggaatcattacaaggattattgtaatctactattcaaaacatatggagatagagtgaagcattggacaacattcaatgaaccacaagtga |
16358 |
T |
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