View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17452_low_72 (Length: 251)
Name: NF17452_low_72
Description: NF17452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17452_low_72 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 36 - 235
Target Start/End: Original strand, 48107897 - 48108098
Alignment:
| Q |
36 |
attacctcaatagtagcaaaataatcgtagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaattgt |
135 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48107897 |
attacctcaatagtagcaaaataatcatagtccaaagaatgaacgcctagccctgcatatatggtgtgaagatatatatgttagatattaaaagaatagt |
48107996 |
T |
|
| Q |
136 |
agcactgaattat--agagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttc |
233 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48107997 |
agcactgaattatagagagagggagagattgaaacctgagataaataaaaggaaagaggtggtgatgaacaacaaattgcagcattttgcagtaaccttc |
48108096 |
T |
|
| Q |
234 |
at |
235 |
Q |
| |
|
|| |
|
|
| T |
48108097 |
at |
48108098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University